Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0543
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1280 + 25846557-25846871,25847278-25847349,25847441-258475... 33 0.23
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 31 0.93
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 31 0.93
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 30 2.1
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 30 2.1
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 30 2.1
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 30 2.1
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 30 2.1
01_06_0739 - 31601656-31602233,31602777-31602906 29 3.7
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 29 4.9
>08_02_1280 +
25846557-25846871,25847278-25847349,25847441-25847599,
25847971-25848099,25848194-25848310,25848434-25848535,
25848759-25848917,25849090-25849464
Length = 475
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 86 SSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIK-EEIPSDTAKPNKETLKSL 262
S +T K++ + K N V + +I V A EI + E IP+ T PNK+ ++ L
Sbjct: 116 SVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYL 175
Query: 263 KKMVLQR 283
+++V+ +
Sbjct: 176 RRLVIHK 182
>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 388 NSKLFPDQKLCLKIIPISHSSVVENLSSNEHNRRYIILYMLYDCSQF 528
N +FP +CL+I+ I+HS+V+E L + + ++ C F
Sbjct: 1083 NLVVFPTNFICLRILVITHSNVLEGLPGGFGCQDTLTTLVILGCPSF 1129
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 31.1 bits (67), Expect = 0.93
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 77 EIKSSQTHKTESAQVPDRKENLVQKDTP 160
E +S THK E+A++ DR+ +L +++ P
Sbjct: 1962 EFSASDTHKMENAEISDRRRSLFRENIP 1989
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 83 KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
K SQ H T A P +++ V K+R+ ++S + P+ E PS ++
Sbjct: 782 KESQQHTTPQAPAPAKRKRPVHTKKRKVRS-LQSLMRNAPVHPEAPSSDSE 831
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 83 KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
K SQ H T A P +++ V K+R+ ++S + P+ E PS ++
Sbjct: 743 KESQQHTTPQAPAPAKRKRPVHTKKRKVRS-LQSLMRNAPVHPEAPSSDSE 792
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 83 KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
K SQ H T A P +++ V K+R+ ++S + P+ E PS ++
Sbjct: 642 KESQQHTTPQAPAPAKRKRPVHAKKRKVRS-LQSLMRNAPVHPEAPSSDSE 691
>05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 83 KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
K SQ H T A P +++ V K+R+ ++S + P+ E PS ++
Sbjct: 873 KESQQHTTPQAPAPAKRKRPVHAKKRKVRS-LQSLMRNAPVHPEAPSSDSE 922
>01_06_0544 + 30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 83 KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
K SQ H T A P +++ V K+R+ ++S + P+ E PS ++
Sbjct: 854 KESQQHTTPQAPAPAKRKRPVHAKKRKVRS-LQSLMRNAPVHPEAPSSDSE 903
>01_06_0739 - 31601656-31602233,31602777-31602906
Length = 235
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 130 KRKSGSKRYSKNTGRCKICHTRN 198
+R+SG + S N GRCKI H ++
Sbjct: 40 RRRSGLQVASSNLGRCKIAHVKS 62
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 142 QIFFSVWYLGTFSFMCLRRLYFRLRSWLYIWSWFYFGA 29
+I + LG FS+ + YF L S LY+ S+ FG+
Sbjct: 379 RIMMKMHGLGDFSYWTISYCYFFLLSLLYVMSFTLFGS 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,617,962
Number of Sequences: 37544
Number of extensions: 314058
Number of successful extensions: 716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -