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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0543
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1280 + 25846557-25846871,25847278-25847349,25847441-258475...    33   0.23 
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    31   0.93 
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244...    31   0.93 
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550...    30   2.1  
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444...    30   2.1  
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941...    30   2.1  
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795...    30   2.1  
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192...    30   2.1  
01_06_0739 - 31601656-31602233,31602777-31602906                       29   3.7  
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    29   4.9  

>08_02_1280 +
           25846557-25846871,25847278-25847349,25847441-25847599,
           25847971-25848099,25848194-25848310,25848434-25848535,
           25848759-25848917,25849090-25849464
          Length = 475

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +2

Query: 86  SSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIK-EEIPSDTAKPNKETLKSL 262
           S +T K++   +   K N V +   +I   V  A  EI  + E IP+ T  PNK+ ++ L
Sbjct: 116 SVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYL 175

Query: 263 KKMVLQR 283
           +++V+ +
Sbjct: 176 RRLVIHK 182


>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
            18238033-18238041,18238096-18238248
          Length = 1465

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 388  NSKLFPDQKLCLKIIPISHSSVVENLSSNEHNRRYIILYMLYDCSQF 528
            N  +FP   +CL+I+ I+HS+V+E L      +  +   ++  C  F
Sbjct: 1083 NLVVFPTNFICLRILVITHSNVLEGLPGGFGCQDTLTTLVILGCPSF 1129


>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
            31825391-31825549,31825965-31826093,31826257-31826460,
            31827200-31827412,31827547-31830912,31830999-31831150,
            31831912-31832407,31832646-31833456,31833537-31834728,
            31834856-31834922
          Length = 2593

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 77   EIKSSQTHKTESAQVPDRKENLVQKDTP 160
            E  +S THK E+A++ DR+ +L +++ P
Sbjct: 1962 EFSASDTHKMENAEISDRRRSLFRENIP 1989


>12_02_0642 +
           21454142-21454251,21454683-21454872,21454988-21455069,
           21455224-21455802,21455854-21456909,21457133-21457251,
           21457369-21457812
          Length = 859

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 83  KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
           K SQ H T  A  P +++  V     K+R+ ++S  +  P+  E PS  ++
Sbjct: 782 KESQQHTTPQAPAPAKRKRPVHTKKRKVRS-LQSLMRNAPVHPEAPSSDSE 831


>12_02_0639 +
           21443480-21443589,21444022-21444211,21444327-21444408,
           21444563-21445054,21445221-21446246,21446470-21446588,
           21446706-21447149
          Length = 820

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 83  KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
           K SQ H T  A  P +++  V     K+R+ ++S  +  P+  E PS  ++
Sbjct: 743 KESQQHTTPQAPAPAKRKRPVHTKKRKVRS-LQSLMRNAPVHPEAPSSDSE 792


>05_03_0187 +
           9413575-9414895,9415014-9415289,9415513-9415631,
           9415749-9416192
          Length = 719

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 83  KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
           K SQ H T  A  P +++  V     K+R+ ++S  +  P+  E PS  ++
Sbjct: 642 KESQQHTTPQAPAPAKRKRPVHAKKRKVRS-LQSLMRNAPVHPEAPSSDSE 691


>05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,
            7957103-7957559
          Length = 946

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 83   KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
            K SQ H T  A  P +++  V     K+R+ ++S  +  P+  E PS  ++
Sbjct: 873  KESQQHTTPQAPAPAKRKRPVHAKKRKVRS-LQSLMRNAPVHPEAPSSDSE 922


>01_06_0544 + 30118208-30118417,30118959-30119063,30119179-30119260,
            30119415-30121250,30121327-30121445,30121563-30122006
          Length = 931

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 83   KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAK 235
            K SQ H T  A  P +++  V     K+R+ ++S  +  P+  E PS  ++
Sbjct: 854  KESQQHTTPQAPAPAKRKRPVHAKKRKVRS-LQSLMRNAPVHPEAPSSDSE 903


>01_06_0739 - 31601656-31602233,31602777-31602906
          Length = 235

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 130 KRKSGSKRYSKNTGRCKICHTRN 198
           +R+SG +  S N GRCKI H ++
Sbjct: 40  RRRSGLQVASSNLGRCKIAHVKS 62


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 142 QIFFSVWYLGTFSFMCLRRLYFRLRSWLYIWSWFYFGA 29
           +I   +  LG FS+  +   YF L S LY+ S+  FG+
Sbjct: 379 RIMMKMHGLGDFSYWTISYCYFFLLSLLYVMSFTLFGS 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,617,962
Number of Sequences: 37544
Number of extensions: 314058
Number of successful extensions: 716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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