Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0543
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 31 1.2
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6) 30 1.7
SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_23450| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 6.7
SB_29956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_15789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_12772| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05) 28 8.8
SB_34621| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05) 28 8.8
>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 31.1 bits (67), Expect = 0.95
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 107 ESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAKPNKETLKSLKKM 271
E + P +E+ ++DTPK K T + KEE P + K + ++ L+K+
Sbjct: 248 EEVEAPKEEESPKEEDTPKEEDAPKEDTPKEEAKEE-PKEDTKEEPKKIEDLEKL 301
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +1
Query: 19 ESSKPRNKTNSRCKANSEA*NKVVSNT*N*KCPGTRQKRKS-----GSKRYSKNTGRCKI 183
+ SKP++++NSRC + S K + G++QK+ S S+R S+ + R
Sbjct: 1845 KKSKPKSRSNSRCSSKSTESKKSKGKS---SSAGSQQKKPSVRDSRPSERSSRASSRSSS 1901
Query: 184 CHTRNTYKRR 213
C + +RR
Sbjct: 1902 CSSSGRIRRR 1911
>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
Length = 722
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 104 TESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAKPNKETLKSLK 265
T+S+ VPD +N +D G KS+ E I ++P+ K E L+ K
Sbjct: 322 TDSSYVPDFGDNAQYQDVNGANGGKKSSADEEYIYADVPNTEGKKILEQLQQRK 375
>SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 83 KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEI-PSDTAKPNK 244
K S+ +T+ + PD K TPK A V S ++ P + PS T +P K
Sbjct: 119 KESKKPETKKPKKPDTAPKATIKATPKPSAPVASTSKTTPARGRAGPSKTRQPIK 173
>SB_23450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 269 SFLMTSMFPCSAWQCQMVSLLL*VFLVWQILHLP 168
+F MT M PC + QM S+L+ + ++ HLP
Sbjct: 37 AFDMTEMRPCQSMSAQMSSVLMHLIILSVYQHLP 70
>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 828
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +2
Query: 77 EIKSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAKPNKE 247
E K + +VP KE ++ P++R ++ ++P++E I +P KE
Sbjct: 445 EQKGETSDGDTKQEVPFIKEEQIEDKGPEVRNDMEPHETDVPLQEPIKPPEPEPLKE 501
>SB_29956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 83 KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEI-PSDTAKP 238
K S+ +T+ + PD K TPK A V S ++ P + PS T +P
Sbjct: 22 KESKKPETKKPKKPDTAPKATIKATPKPSAPVASTSKTTPARGRAGPSKTRQP 74
>SB_15789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 134 ENLVQKDTPKIRAGVKSATQ-EIPIKEEIPSDTAKPNKETLKSLKKMVLQR 283
EN+++ + G K A+ + KEE+P D A+ K+++ + M QR
Sbjct: 210 ENVLKSSGFQRTPGKKEASNCKAACKEEVPDDVARVIKQSMSGYEAMYAQR 260
>SB_12772| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05)
Length = 213
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +1
Query: 109 KCPGTRQKRKSGSKRYSKNTGRCK---ICHTRNTYKRRDTI*HCQAEQGNIEVIKKDGPT 279
+CP T + G + + G+C+ +C Y++ + HCQ + I D
Sbjct: 31 RCPSTFKAPARGCRYECFSDGQCQPDHVCCVSGCYRKCVALTHCQKAKLEYSAIGDDEEG 90
Query: 280 EIPN 291
+PN
Sbjct: 91 YVPN 94
>SB_34621| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05)
Length = 129
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +1
Query: 109 KCPGTRQKRKSGSKRYSKNTGRCK---ICHTRNTYKRRDTI*HCQAEQGNIEVIKKDGPT 279
+CP T + G + + G+C+ +C Y++ + HCQ + I D
Sbjct: 2 RCPSTFKAPARGCRYECFSDGQCQPDHVCCVSGCYRKCVALTHCQKAKLEYSAIGDDEEG 61
Query: 280 EIPN 291
+PN
Sbjct: 62 YVPN 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,220,012
Number of Sequences: 59808
Number of extensions: 387118
Number of successful extensions: 1012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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