Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0543
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL009246-7|CAA15840.2|  347|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF040655-2|AAB95042.2|  306|Caenorhabditis elegans Serpentine re...    29   4.4  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    29   4.4  
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ...    29   4.4  
AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ...    29   4.4  

>AL009246-7|CAA15840.2|  347|Caenorhabditis elegans Hypothetical
           protein C47F8.8 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 157 SKNTGRCKICHTRNTYKRRDTI*HCQA 237
           SKN G C++CH   T +R   I  C A
Sbjct: 5   SKNRGPCQVCHNTETTRRHFGIISCTA 31


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 646 FIHLKFTTFFINIK--YNKIVKL*IRSNYKYSHYATNITVTQIVNNHKACIILYIYDYVH 473
           F  L    FF+N+   +N ++ L +  +   +   +N  +T   +N +    + ++ ++H
Sbjct: 44  FYKLFIVGFFMNMMTYFNSLISLRLPQSNGINETLSNFFLTHNEHNMEVIFPVKVFHFLH 103

Query: 472 YYLGFLQ 452
           YY  + Q
Sbjct: 104 YYFAYAQ 110


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 646 FIHLKFTTFFINIK--YNKIVKL*IRSNYKYSHYATNITVTQIVNNHKACIILYIYDYVH 473
           F  L    FF+N+   +N ++ L +  +   +   +N  +T   +N +    + ++ ++H
Sbjct: 44  FYKLFIVGFFMNMMTYFNSLISLRLPQSNGINETLSNFFLTHNEHNMEVIFPVKVFHFLH 103

Query: 472 YYLGFLQ 452
           YY  + Q
Sbjct: 104 YYFAYAQ 110


>AF040655-2|AAB95042.2|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein111 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 194 LVWQILHLPVFLEYLFEPDFLFCLVP 117
           L W     P F+ Y+ + DFLF ++P
Sbjct: 158 LTWMHDECPYFIHYILQSDFLFLVLP 183


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = -3

Query: 661 NWSMIFIHLKFTTFFINIKYNKI---VKL*IRSNYKYSHYATNITV---TQIVNNHKACI 500
           N+   F  L     F+ + Y  I   V L I    KY+    N+ V   T I  +   C+
Sbjct: 24  NFEFSFFTLPMFLLFLPVIYMPITFIVMLRILVKLKYAMRDKNVNVPLFTAICISQFTCL 83

Query: 499 ILYIYDYVHYYL 464
           + +I+D+VH  L
Sbjct: 84  LFFIFDFVHIRL 95


>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
            glutamate receptorfamily protein 3, isoform a protein.
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 86   SSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDT 229
            SS  H    +   + K +++++DT K R  +  + Q   I EEI +DT
Sbjct: 990  SSVAHIPPRSYTDEPKSSMIRQDTAKSRTSLAESHQVDLILEEIAADT 1037


>AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic
            glutamate receptorfamily protein 3, isoform d protein.
          Length = 1044

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 86   SSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDT 229
            SS  H    +   + K +++++DT K R  +  + Q   I EEI +DT
Sbjct: 992  SSVAHIPPRSYTDEPKSSMIRQDTAKSRTSLAESHQVDLILEEIAADT 1039


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,711
Number of Sequences: 27780
Number of extensions: 333765
Number of successful extensions: 1052
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)