BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0543 (723 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 29 2.5 Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical pr... 29 3.4 Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical pr... 29 3.4 AF040655-2|AAB95042.2| 306|Caenorhabditis elegans Serpentine re... 29 4.4 AF024494-12|AAB70332.3| 332|Caenorhabditis elegans Serpentine r... 29 4.4 AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ... 29 4.4 AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ... 29 4.4 >AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical protein C47F8.8 protein. Length = 347 Score = 29.5 bits (63), Expect = 2.5 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +1 Query: 157 SKNTGRCKICHTRNTYKRRDTI*HCQA 237 SKN G C++CH T +R I C A Sbjct: 5 SKNRGPCQVCHNTETTRRHFGIISCTA 31 >Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical protein K04C1.6 protein. Length = 332 Score = 29.1 bits (62), Expect = 3.4 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = -3 Query: 646 FIHLKFTTFFINIK--YNKIVKL*IRSNYKYSHYATNITVTQIVNNHKACIILYIYDYVH 473 F L FF+N+ +N ++ L + + + +N +T +N + + ++ ++H Sbjct: 44 FYKLFIVGFFMNMMTYFNSLISLRLPQSNGINETLSNFFLTHNEHNMEVIFPVKVFHFLH 103 Query: 472 YYLGFLQ 452 YY + Q Sbjct: 104 YYFAYAQ 110 >Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical protein K04C1.6 protein. Length = 332 Score = 29.1 bits (62), Expect = 3.4 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = -3 Query: 646 FIHLKFTTFFINIK--YNKIVKL*IRSNYKYSHYATNITVTQIVNNHKACIILYIYDYVH 473 F L FF+N+ +N ++ L + + + +N +T +N + + ++ ++H Sbjct: 44 FYKLFIVGFFMNMMTYFNSLISLRLPQSNGINETLSNFFLTHNEHNMEVIFPVKVFHFLH 103 Query: 472 YYLGFLQ 452 YY + Q Sbjct: 104 YYFAYAQ 110 >AF040655-2|AAB95042.2| 306|Caenorhabditis elegans Serpentine receptor, class x protein111 protein. Length = 306 Score = 28.7 bits (61), Expect = 4.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 194 LVWQILHLPVFLEYLFEPDFLFCLVP 117 L W P F+ Y+ + DFLF ++P Sbjct: 158 LTWMHDECPYFIHYILQSDFLFLVLP 183 >AF024494-12|AAB70332.3| 332|Caenorhabditis elegans Serpentine receptor, class u protein28 protein. Length = 332 Score = 28.7 bits (61), Expect = 4.4 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Frame = -3 Query: 661 NWSMIFIHLKFTTFFINIKYNKI---VKL*IRSNYKYSHYATNITV---TQIVNNHKACI 500 N+ F L F+ + Y I V L I KY+ N+ V T I + C+ Sbjct: 24 NFEFSFFTLPMFLLFLPVIYMPITFIVMLRILVKLKYAMRDKNVNVPLFTAICISQFTCL 83 Query: 499 ILYIYDYVHYYL 464 + +I+D+VH L Sbjct: 84 LFFIFDFVHIRL 95 >AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic glutamate receptorfamily protein 3, isoform a protein. Length = 1042 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +2 Query: 86 SSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDT 229 SS H + + K +++++DT K R + + Q I EEI +DT Sbjct: 990 SSVAHIPPRSYTDEPKSSMIRQDTAKSRTSLAESHQVDLILEEIAADT 1037 >AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic glutamate receptorfamily protein 3, isoform d protein. Length = 1044 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +2 Query: 86 SSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDT 229 SS H + + K +++++DT K R + + Q I EEI +DT Sbjct: 992 SSVAHIPPRSYTDEPKSSMIRQDTAKSRTSLAESHQVDLILEEIAADT 1039 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,795,711 Number of Sequences: 27780 Number of extensions: 333765 Number of successful extensions: 1052 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 997 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1051 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1697838058 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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