Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0543
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48610.1 68418.m06012 expressed protein ; expression supporte...    31   0.58 
At1g09930.1 68414.m01117 oligopeptide transporter OPT family pro...    30   1.4  
At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /...    30   1.8  
At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein ...    29   4.1  
At2g31760.1 68415.m03878 zinc finger protein-related contains lo...    29   4.1  
At5g18200.1 68418.m02136 expressed protein                             28   5.5  
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    28   5.5  
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    28   7.2  
At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger) fa...    27   9.5  
At5g44050.1 68418.m05390 MATE efflux family protein similar to r...    27   9.5  
At2g07707.1 68415.m00957 hypothetical protein contains Pfam prof...    27   9.5  

>At5g48610.1 68418.m06012 expressed protein ; expression supported
           by MPSS
          Length = 470

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 92  QTHKTESAQVPDRKENLVQKDTPKIRAGVK--SATQEIPIKEEIPSDTAKPNK 244
           Q  +TESA+   RKEN+ + + P+ + GVK   A  +   KE+    T   NK
Sbjct: 196 QVRQTESAEKSHRKENVTKSEKPRDQEGVKKTEAKDKDRNKEKKEEKTESINK 248


>At1g09930.1 68414.m01117 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 734

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -3

Query: 229 SVRWYLFFYRYFLCGRFYTCPYF-WSIFLNQIFFSVWYLGTFSFMCLRRLYFRLRSWLYI 53
           SV WYL      +C +    P   W+   +++FF    +  +  +  +R++ RL ++  +
Sbjct: 542 SVAWYLLTSVENICQKELLPPNSPWTCPSDRVFFDASVI--WGLVGPKRIFGRLGNYPAL 599

Query: 52  WSWFYFGAWKIPLLVW 5
            +WF+ G    P+LVW
Sbjct: 600 -NWFFLGGLIGPVLVW 614


>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24280) [Saccharomyces
           cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
           come from this gene
          Length = 540

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 83  KSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAKPNKETLKSL 262
           K  +    E  +   + E +V ++ PK        T+EI  KEE+ +   K  +ET +  
Sbjct: 115 KKKEEAAEEKVEEEKKSEAVVTEEAPKAETVEAVVTEEIIPKEEVTTVVEKVEEETKEEE 174

Query: 263 KK 268
           KK
Sbjct: 175 KK 176


>At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 300

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 655 SMIFIHLKFTTFFINIKYNKIVKL*IRSNYKYSHYATNITVTQIVNNHKACII-LYIYDY 479
           S+ F +   T   +   Y+ + +    S   +SH+ T ++ TQ + N    I+   I+D 
Sbjct: 67  SVGFNNSHMTYHMLKRNYDSVSRADYFSTKDHSHF-TQVSFTQTITNKYTTIVPSNIFDT 125

Query: 478 VHYYLG 461
           VHY +G
Sbjct: 126 VHYDIG 131


>At2g31760.1 68415.m03878 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 514

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 556 HYATNITVTQIVNNHKACIILYIYDYVHYYLGFLQLRNEKLE*FSDI 416
           HYA N  V    ++ +  +   I  Y HYY+ +++ ++ +L+  SD+
Sbjct: 315 HYACNNYVEDADHDKRTLLQSEIKRYTHYYVRWVENQSSRLKAMSDL 361


>At5g18200.1 68418.m02136 expressed protein
          Length = 351

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 115 PGTRQKRKSGSKRYSKNTGRCKICHTRNTY 204
           P T   R  G+K Y + TG+C +C  ++ +
Sbjct: 196 PPTVSSRLDGTKDYFEETGKCCLCEAKSKH 225


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
            ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 77   EIKSSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDT---AKPNKE 247
            E+  + T + E A+ P +KE  ++K +  +   +  A  +   +E  P+D+    KP  E
Sbjct: 1191 EMDVANTEQEEPAEEPQKKEENLEKTSGTVADPITEAETDNRKEERGPNDSKTEIKPKSE 1250

Query: 248  TLKSLKK 268
            T K  K+
Sbjct: 1251 TEKHGKQ 1257


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 112 CPGTRQKRKSGSKRYSKNTGRCKICHTRNTYKRR 213
           C G ++KR+SG  R  K   +C +  TR T  R+
Sbjct: 260 CKGNKRKRRSGEGR--KRRKKCSVAKTRLTRGRK 291


>At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 112 CPGTRQKRKSGSKRYSKNTGR----CKICHTRNTYKRRDT 219
           CP  + +  +   RYS ++      C++CH+  + +R DT
Sbjct: 19  CPPVKNEELAAEARYSTDSDSGLPTCRVCHSAESDRRGDT 58


>At5g44050.1 68418.m05390 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 491

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
 Frame = -3

Query: 241 VRLGSVRWYL---FFYRYFLCGRFYTCPYFWSIFLNQIFFSVWYLGTFS-----FMCLRR 86
           +   +V W+L     + Y  CG    CP  W+ F  + F  +W     S      +CL  
Sbjct: 223 IATANVSWWLNVFILFTYTTCGG---CPLTWTGFSMESFTRLWEFTKLSASSGIMVCLEN 279

Query: 85  LYFRL 71
            Y+R+
Sbjct: 280 WYYRM 284


>At2g07707.1 68415.m00957 hypothetical protein contains Pfam profile
           PF02326: YMF19 hypothetical plant mitochondrial protein
          Length = 158

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = -2

Query: 395 LEFLNEMIS**KYKITQRDPSHSNLKQPRGLYRLGFGISVGPSFLMTSMFPCSAWQCQMV 216
           L+  N+++S     I  +DP+  +L+    L R GF  S G S++  S+F  S W C+ V
Sbjct: 41  LKLRNQLLSHRGKTIRSKDPN--SLED---LLRKGF--STGVSYMYASLFEVSQW-CKAV 92

Query: 215 SLL 207
            LL
Sbjct: 93  DLL 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,917
Number of Sequences: 28952
Number of extensions: 288866
Number of successful extensions: 768
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)