Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0542
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    28   1.6  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    26   4.9  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   4.9  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   8.5  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 578 ELGEKCSDLQREIRYLKALMRDLSRRRV*SSKSINNAASREIKQYAKTHKAIDSVDHRKL 399
           +L E   +L   I  LKA +  ++       K+   A  +++K   K H+ I+   HRK 
Sbjct: 624 QLSESIDELNNNIEELKAQLNAINTL---IKKAELVADQKQLKSLTKNHQEIEKAIHRKE 680

Query: 398 RE 393
           R+
Sbjct: 681 RQ 682


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 716 KTRSVDDRRSRK-KEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQREI 540
           K + VDD + R+  E+N+ AA+++RQ                 ++   L    S LQ+E 
Sbjct: 4   KKKEVDDEKRRRILERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEA 63

Query: 539 RYLKA 525
             LK+
Sbjct: 64  FRLKS 68


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = -1

Query: 575 LGEKCSDLQREIRYLKALMRDLSRRRV*SSKSINNAASREIKQYAKTHKAIDSVDHRKLR 396
           L  +C   +  + YLK+  + LSRR   ++  INN  +     +      +  + H  + 
Sbjct: 615 LSSRCEFARESLNYLKSFNKQLSRR---NAPDINNPIADFQNSFQNWQSWVGDMSHGDML 671

Query: 395 EFFNL 381
             F L
Sbjct: 672 STFKL 676


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 155  YKYTYFYNNECDLSSK*IN 211
            Y Y YF N +C++ SK +N
Sbjct: 1589 YAYPYFINFQCEMFSKVLN 1607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,897
Number of Sequences: 5004
Number of extensions: 47192
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)