BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0542 (737 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 28 1.6 SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 26 4.9 SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 4.9 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 8.5 >SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1010 Score = 27.9 bits (59), Expect = 1.6 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = -1 Query: 578 ELGEKCSDLQREIRYLKALMRDLSRRRV*SSKSINNAASREIKQYAKTHKAIDSVDHRKL 399 +L E +L I LKA + ++ K+ A +++K K H+ I+ HRK Sbjct: 624 QLSESIDELNNNIEELKAQLNAINTL---IKKAELVADQKQLKSLTKNHQEIEKAIHRKE 680 Query: 398 RE 393 R+ Sbjct: 681 RQ 682 >SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 171 Score = 26.2 bits (55), Expect = 4.9 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = -1 Query: 716 KTRSVDDRRSRK-KEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQREI 540 K + VDD + R+ E+N+ AA+++RQ ++ L S LQ+E Sbjct: 4 KKKEVDDEKRRRILERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEA 63 Query: 539 RYLKA 525 LK+ Sbjct: 64 FRLKS 68 >SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 26.2 bits (55), Expect = 4.9 Identities = 15/65 (23%), Positives = 27/65 (41%) Frame = -1 Query: 575 LGEKCSDLQREIRYLKALMRDLSRRRV*SSKSINNAASREIKQYAKTHKAIDSVDHRKLR 396 L +C + + YLK+ + LSRR ++ INN + + + + H + Sbjct: 615 LSSRCEFARESLNYLKSFNKQLSRR---NAPDINNPIADFQNSFQNWQSWVGDMSHGDML 671 Query: 395 EFFNL 381 F L Sbjct: 672 STFKL 676 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 25.4 bits (53), Expect = 8.5 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +2 Query: 155 YKYTYFYNNECDLSSK*IN 211 Y Y YF N +C++ SK +N Sbjct: 1589 YAYPYFINFQCEMFSKVLN 1607 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,565,897 Number of Sequences: 5004 Number of extensions: 47192 Number of successful extensions: 94 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 94 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 349251756 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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