Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0542
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_3656| Best HMM Match : bZIP_2 (HMM E-Value=1e-09)                   29   3.9  
SB_50760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  

>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 23/73 (31%), Positives = 39/73 (53%)
 Frame = -1

Query: 695 RRSRKKEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQREIRYLKALMR 516
           +R RK+ QNK+AATRYR              + L + + +L ++   L +EI YLK LM 
Sbjct: 447 QRQRKRVQNKDAATRYRVKKKDEQSRLFDEAEKLEKENNKLKDEVGSLSKEIEYLKNLML 506

Query: 515 DLSRRRV*SSKSI 477
           ++ + +    +S+
Sbjct: 507 EVYQTKQKQKESL 519


>SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = -1

Query: 725 SRLKTRSVDDRRSRKKEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQR 546
           + + T   ++RR  ++E+NK AA++ RQ             + L  ++  L  + + L  
Sbjct: 90  TEMVTPEEEERRKLRRERNKVAASKCRQKRKQHVRNLVQVSEALEVQNNTLQSQITKLHD 149

Query: 545 EIRYLKALMRDLSRRRV*SSKSINN 471
           EI+ L+ ++   S  R  S    NN
Sbjct: 150 EIKQLEFMLDSHSCSRHASGGHGNN 174


>SB_3656| Best HMM Match : bZIP_2 (HMM E-Value=1e-09)
          Length = 241

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = -1

Query: 728 PSRLKTRSVDDRRSRKKEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQ 549
           PS   +    D+   K+++N  A+ ++RQ            E  L + +  L  +   L 
Sbjct: 167 PSPSSSSGDSDKSEEKRKRNNQASKKFRQARKGKQQALFAKESELERENYSLKVQVEQLI 226

Query: 548 REIRYLKALMRDLSR 504
           RE+  LKA +   S+
Sbjct: 227 RELNQLKAALHGGSK 241


>SB_50760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 593 RQRHTELGEKCSDLQREIRYLKALMRDLSRRRV*SSKSINNAASRE 456
           + R T+  E+ +D+Q +IR+L+  + D   R   S   I N   RE
Sbjct: 4   KYRSTDYAERFNDIQNDIRFLRETISDFQNRF--SEDKIVNTRRRE 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,849,161
Number of Sequences: 59808
Number of extensions: 337500
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)