Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0540
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 105 HHRSLGQSDAGEENYELGGHDVL 37
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 242 EPSFQALLKSCASFDLVSELN 180
           EP    +  + ASFD +SE+N
Sbjct: 59  EPLLVGMDLTIASFDAISEVN 79


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 351 RCSASTVPKPPWPCRSRLRALPGDS 277
           R S S  P+PP   R R    P DS
Sbjct: 556 RASLSKTPQPPQCPRFRKLDSPSDS 580


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 39  AHHGRQVRSSLRLHRSGPRSDGATRRSRLLQ 131
           A +G+   +   LHR+   S  +  +SRL++
Sbjct: 119 ASNGKIYANHCELHRAACHSGSSLTKSRLMR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,214
Number of Sequences: 438
Number of extensions: 2042
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)