Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0540
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC... 36 0.018
At2g35070.1 68415.m04302 expressed protein 33 0.098
At3g58840.1 68416.m06558 expressed protein 31 0.39
At3g09980.1 68416.m01198 expressed protein contains Pfam profile... 31 0.52
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 30 0.69
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 30 0.69
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 30 0.91
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 29 1.6
At2g48160.1 68415.m06031 PWWP domain-containing protein 29 1.6
At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00... 29 2.1
At4g27595.1 68417.m03964 protein transport protein-related low s... 29 2.1
At3g12360.1 68416.m01541 ankyrin repeat family protein contains ... 29 2.1
At2g36410.2 68415.m04470 expressed protein contains Pfam profile... 29 2.1
At2g36410.1 68415.m04469 expressed protein contains Pfam profile... 29 2.1
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 29 2.1
At3g09550.1 68416.m01134 ankyrin repeat family protein contains ... 28 2.8
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida... 28 2.8
At5g20440.1 68418.m02430 mob1/phocein family protein contains Pf... 28 3.7
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro... 28 3.7
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi... 28 3.7
At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containi... 28 3.7
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 28 3.7
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 28 3.7
At3g02930.1 68416.m00288 expressed protein ; expression support... 28 3.7
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr... 28 3.7
At2g19410.1 68415.m02264 protein kinase family protein contains ... 28 3.7
At1g45545.1 68414.m05199 hypothetical protein contains Pfam prof... 28 3.7
At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 28 3.7
At3g59080.1 68416.m06586 aspartyl protease family protein contai... 27 4.8
At2g01680.1 68415.m00095 ankyrin repeat family protein contains ... 27 4.8
At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C... 27 6.4
At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C... 27 6.4
At3g50370.1 68416.m05508 expressed protein 27 6.4
At3g50100.1 68416.m05477 exonuclease family protein contains exo... 27 6.4
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 27 6.4
At2g30880.2 68415.m03764 pleckstrin homology (PH) domain-contain... 27 6.4
At2g30880.1 68415.m03763 pleckstrin homology (PH) domain-contain... 27 6.4
At2g26570.1 68415.m03187 expressed protein contains Pfam profile... 27 6.4
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 27 6.4
At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966, gb|R6... 27 6.4
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr... 27 6.4
At5g63640.1 68418.m07990 VHS domain-containing protein / GAT dom... 27 8.5
At3g60620.1 68416.m06783 phosphatidate cytidylyltransferase fami... 27 8.5
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 27 8.5
At2g46930.1 68415.m05862 pectinacetylesterase, putative similar ... 27 8.5
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m... 27 8.5
>At2g36640.1 68415.m04494 late embryogenesis abundant protein
(ECP63) / LEA protein nearly identical to to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 448
Score = 35.5 bits (78), Expect = 0.018
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +3
Query: 282 LQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQESQ 461
L G +A GKA E + +++N+E+ E R+ ++ +L+E+ A Q Q+++
Sbjct: 278 LSGKTEEAKGKAVETKDTAKENMEKAGEVTRQKMEEMRLEGKELKEEAGAKAQEASQKTR 337
Query: 462 K 464
+
Sbjct: 338 E 338
>At2g35070.1 68415.m04302 expressed protein
Length = 158
Score = 33.1 bits (72), Expect = 0.098
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 207 RTGLQQGLEGRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQ-NIERTAEELRKAH 383
+ G+ + LE + V + Q A ++ GK K + +S + R AEE RK
Sbjct: 30 KLGMVKALEA-INVPSTQAEALTGAITSGFESVMGKVKADIAKSEEYKSTRVAEEFRKMR 88
Query: 384 PDVEKNATDL 413
D+EK D+
Sbjct: 89 ADIEKMRADI 98
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 31.1 bits (67), Expect = 0.39
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 312 KAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQESQK 464
KA + + + E+ AE LRK +VEK DL K+ ++E K
Sbjct: 128 KALAEIVEKLEGCEKEAEGLRKDRAEVEKRVRDLERKIGVLEVREMEEKSK 178
>At3g09980.1 68416.m01198 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 178
Score = 30.7 bits (66), Expect = 0.52
Identities = 20/74 (27%), Positives = 39/74 (52%)
Frame = +3
Query: 246 VRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKL 425
V ++QL A L G++ ++ +KE E SR + R ++EK ++RE++
Sbjct: 19 VHSRQLGA---QLSGSMSFSSQMSKEDEEMSRTALSA----FRAKEEEIEKKKMEIRERV 71
Query: 426 QAAVQNTVQESQKL 467
QA + +E+++L
Sbjct: 72 QAQLGRVEEETKRL 85
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 30.3 bits (65), Expect = 0.69
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 210 TGLQQGLEGRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNI---ERTAEELRKA 380
+ +QQ LE R R +A + + + L AN K ++ +E+ R ++ E E L+++
Sbjct: 198 SSMQQELE-RTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQS 256
Query: 381 HPDVEKNATDLREKLQA 431
D ++ DL+++LQA
Sbjct: 257 LLDKDQILEDLKKQLQA 273
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 30.3 bits (65), Expect = 0.69
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 210 TGLQQGLEGRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNI---ERTAEELRKA 380
+ +QQ LE R R +A + + + L AN K ++ +E+ R ++ E E L+++
Sbjct: 198 SSMQQELE-RTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQS 256
Query: 381 HPDVEKNATDLREKLQA 431
D ++ DL+++LQA
Sbjct: 257 LLDKDQILEDLKKQLQA 273
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 29.9 bits (64), Expect = 0.91
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 255 QQLNAFAKSLQGALGDAN-GKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQA 431
QQL+ KSL+ + D A+E LEQ + +EE K + VEK A D + L
Sbjct: 214 QQLDKQRKSLEYTIYDKELHDAREKLEQVEVARTKASEESTKMYDRVEK-AQDDSKSLDE 272
Query: 432 AVQNTVQESQKL 467
+++ +E Q L
Sbjct: 273 SLKELTKELQTL 284
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 321 EALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQ 452
EAL+ S Q + AE LRKA + E ++L +L+ A + Q
Sbjct: 997 EALKASLQAERQAAENLRKAFSEAEARNSELATELENATRKADQ 1040
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +3
Query: 3 PVRISSALSLSTAHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 161
P+R++ LS ST H+ G + S ++L S P++DG+ + R H PH P
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPHPPPP 1239
>At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 579
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 211 QDFSKAWKDGSESVLNSSTPSPRVSRERSETRTARPRRLWN 333
+ FS+ ++ G + +L S+ S +S RSETR ++ N
Sbjct: 321 KSFSRYFRSGIKHILGRSSSSKNMSSSRSETRPLNLQKFLN 361
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 28.7 bits (61), Expect = 2.1
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 300 DANGKAKEAL---EQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQESQKLV 470
D K KE+L E QNI + AEELR D K E+L AA ++ V++ KL+
Sbjct: 647 DQLSKVKESLVDKETKLQNIIQEAEELRVKEIDYLKKI----EELSAAKESLVEKETKLL 702
>At3g12360.1 68416.m01541 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 590
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 246 VRAQQLNAFAKSLQGALGDANGKAKEALEQSRQ---NIERTAEELRKAHPDVEKNATD 410
+RA +LN L+ + LEQ+++ N+ ++ELRK H + NAT+
Sbjct: 363 LRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATN 420
>At2g36410.2 68415.m04470 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 192
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 309 GKAKEALEQSRQNIERTAEEL---RKAHPDVEKNATDLREKLQAAVQNTVQESQKL 467
G + SR++ E T L R ++EK ++RE++QA + QE+++L
Sbjct: 45 GSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRL 100
>At2g36410.1 68415.m04469 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 195
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 309 GKAKEALEQSRQNIERTAEEL---RKAHPDVEKNATDLREKLQAAVQNTVQESQKL 467
G + SR++ E T L R ++EK ++RE++QA + QE+++L
Sbjct: 45 GSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRL 100
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 28.7 bits (61), Expect = 2.1
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 216 LQQGLEGRLRVRAQ-QLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDV 392
LQ E L QL + L+G +G + + + AL++ + IER ++
Sbjct: 328 LQSSSESELLAETNNQLKIKIQELEGLIGSGSVEKETALKRLEEAIERFNQK-------- 379
Query: 393 EKNATDLREKLQAAVQNTVQESQKL 467
E ++DL EKL+ +N ++E +KL
Sbjct: 380 ETESSDLVEKLKTH-ENQIEEYKKL 403
Score = 28.3 bits (60), Expect = 2.8
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +3
Query: 237 RLRVRAQQLNAFAKSLQGALGDANGKAKEALE--QSRQNIERTAEELRKAHPDVEKNATD 410
+L+ Q+ + K A G A+ + E + +N+E T EEL +EK + D
Sbjct: 389 KLKTHENQIEEYKKLAHEASGVADTRKVELEDALSKLKNLESTIEELGAKCQGLEKESGD 448
Query: 411 LRE---KLQAAVQNTVQESQKL 467
L E KL + N E+ +L
Sbjct: 449 LAEVNLKLNLELANHGSEANEL 470
>At3g09550.1 68416.m01134 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 436
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 246 VRAQQLNAFAKSLQGALGDANGKAKEALEQSRQ---NIERTAEELRKAHPDVEKNATD 410
++A +LN L+ + + LEQ+R+ N++ A+ELRK H NAT+
Sbjct: 206 LKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINNATN 263
>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
putative / ACC oxidase, putative nearly identical to ACC
oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
Length = 320
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 121 DFFKDIEHHTKEFHKTL-EQQFNSLTKSKDAQDFSKAWKD 237
D IE TK+ +KT EQ+FN + KSK + +D
Sbjct: 47 DLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVED 86
>At5g20440.1 68418.m02430 mob1/phocein family protein contains Pfam
profile: PF03637 mob1/phocein family
Length = 217
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 336 SRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQESQKL 467
S N+ RT ++ HP+ + + +RE + + ++E+ +L
Sbjct: 9 SSNNVVRTVPSKKRKHPEYKSKGSQIRELISGIRSDNLREAVRL 52
>At5g07780.1 68418.m00890 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 464
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 378 PCGAPRPCARCSASTVPKPPWPCRSRLRALPGDSW 274
P PRPC+R + P + RALPG W
Sbjct: 61 PPPLPRPCSRPPKTKCSLKPLHWVKKTRALPGSLW 95
>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 904
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 118 PDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLNSSTPSPRVSRERS 297
PD F I T H T S T+ D S + +E+ +NS++ +P V R RS
Sbjct: 30 PDQFP-IHFVTSSIHATRASSIGSSTRVLDKIRVSSLGTEANENAINSASAAP-VERSRS 87
>At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 850
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -1
Query: 317 GLAVRVSERSLETLGEGVELLSTDSEPSFQALLKSCASFDLVSE 186
G A+RV E + + EGV+ +E ++ A+L +C+ LVSE
Sbjct: 554 GFAIRVLETFNQMIEEGVK----PNEVTYVAILSACSHVGLVSE 593
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 199 SKDAQDFSKAWKDGSESVLNSSTPSPRVSRERSETRTARPRRLW 330
S + FS++ + S+S L SS P S R TR A P +LW
Sbjct: 354 SSISSKFSQSKRFSSDSPLTSS-PRGMTSPIRGATRPASPSKLW 396
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 199 SKDAQDFSKAWKDGSESVLNSSTPSPRVSRERSETRTARPRRLW 330
S + FS++ + S+S L SS P S R TR A P +LW
Sbjct: 354 SSISSKFSQSKRFSSDSPLTSS-PRGMTSPIRGATRPASPSKLW 396
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 273 AKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQ 452
AK L+ L +AN K ++ S ++ + E D+E TDL+EK++ ++ TV
Sbjct: 315 AKELEKRLEEAN-KLEKCASVSLVSVTKQLEVSNSRLHDMESEITDLKEKIE-LLEMTV- 371
Query: 453 ESQKL 467
SQK+
Sbjct: 372 ASQKV 376
>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
domains; weak similarity to HPSR2 - heavy chain
potential motor protein (GI:871048) [Giardia
intestinalis]
Length = 702
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 285 QGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQ 428
Q AL + + +AL + ER AEE R AH + A + +L+
Sbjct: 369 QAALNEGKLSSLQALREELATTERRAEEERSAHNATKMAAMERERELE 416
>At2g19410.1 68415.m02264 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 801
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 208 AQDFSKAWKDGSESVLNSSTPSPRVSRERSETRTARPRRL 327
A DF + W ++ + + P PR S E R+A R L
Sbjct: 190 AHDFLRDWAASFHTLRSPTLPDPRQSTEAGTRRSASAREL 229
>At1g45545.1 68414.m05199 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 752
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 273 AKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQ 452
AKSL A + KAKE ++++ + +L ++ ++E A+ EKL A +Q
Sbjct: 512 AKSLAIAAREELRKAKEESDEAKTGLSAVERQLMESKKEME--ASRASEKLALAAIKALQ 569
Query: 453 ESQ 461
E++
Sbjct: 570 ETE 572
>At1g19700.1 68414.m02457 homeobox-leucine zipper family protein
similar to BEL1-like homeodomain 1 (GI:13877517)
[Arabidopsis thaliana]; similar to homeodomain protein
GI:7239157 from (Malus domestica); contains weak hit to
Pfam profile PF00046: Homeobox domain
Length = 538
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 234 GRLRVRAQQLNAFAKSLQGALG----DANGKAKEALEQSRQNIERTAEELRKAHPDVEKN 401
G+ +++ N+ +K ++G G D+NGK+ E R+ ++ +L +V+K
Sbjct: 193 GKKKMKVNDFNSGSKEIEGGGGELSSDSNGKSIELSTIEREELQNKKNKLLTMVDEVDKR 252
Query: 402 ATDLREKLQA 431
+++A
Sbjct: 253 YNQYYHQMEA 262
>At3g59080.1 68416.m06586 aspartyl protease family protein contains
similarity to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) [Nicotiana tabacum]; contains Pfam
profile PF00026: Eukaryotic aspartyl protease
Length = 535
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 351 RCSASTVPKPPWPCRSRLRALPGDSW 274
RC+ + P PP PC+S ++ P W
Sbjct: 229 RCNLVSSPDPPMPCKSDNQSCPYYYW 254
>At2g01680.1 68415.m00095 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 532
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +3
Query: 273 AKSLQGALGDANGKAKEAL---EQSRQNIERTAEELRKAHPDVEKNATD 410
A++L+ A+ D + + L E++ + + A+ELRK H + +N T+
Sbjct: 304 ARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTN 352
>At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 312 KAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQESQKL 467
KA + + +IE EELR HPD + N L+ K+ V+ +Q S+ +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSI 237
>At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 312 KAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQESQKL 467
KA + + +IE EELR HPD + N L+ K+ V+ +Q S+ +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSI 237
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 330 EQSRQNIERTAEELRKAHPDVEKNATDLRE--KLQAAVQNTVQESQKL 467
EQ R R AEELRK+ + EK+ + E + QAA Q ++ +K+
Sbjct: 531 EQERLEATRRAEELRKSKEE-EKHRLFMEEERRKQAAKQKLLELEEKI 577
>At3g50100.1 68416.m05477 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 406
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 QQLNAFAKSLQGA-LGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREK 422
Q L+ K LQ L NG KE L +N + ++ R++H D+ + T ++K
Sbjct: 11 QVLDELVKLLQSRDLRGENGNWKEFLHVYDKNADSPSDPSRRSHEDLVQFLTTFKKK 67
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 27.1 bits (57), Expect = 6.4
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +3
Query: 231 EGRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQ------NIERTAEELRKAHPDV 392
E RLR R ++L SLQ + + K E ++ R + TAEE+R+ + +
Sbjct: 374 EKRLRERVRELAEHNVSLQREISTFHEKETERIDMIRHLDETVTELSATAEEMREENLFL 433
Query: 393 EKNATDLRE 419
+N + L+E
Sbjct: 434 MQNLSKLQE 442
>At2g30880.2 68415.m03764 pleckstrin homology (PH) domain-containing
protein contains Pfam profile PF00169: PH domain
Length = 381
Score = 27.1 bits (57), Expect = 6.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +3
Query: 276 KSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAV-----Q 440
K + G L D KE L + + A ELR +++ A L E +AAV
Sbjct: 194 KPIDGPLDDLT-IMKETLRVKDEELHNLARELRSRDSMIKEIADKLSETAEAAVAAASAA 252
Query: 441 NTVQESQKLV 470
+T+ E +K+V
Sbjct: 253 HTMDEQRKIV 262
>At2g30880.1 68415.m03763 pleckstrin homology (PH) domain-containing
protein contains Pfam profile PF00169: PH domain
Length = 504
Score = 27.1 bits (57), Expect = 6.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +3
Query: 276 KSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAV-----Q 440
K + G L D KE L + + A ELR +++ A L E +AAV
Sbjct: 194 KPIDGPLDDLT-IMKETLRVKDEELHNLARELRSRDSMIKEIADKLSETAEAAVAAASAA 252
Query: 441 NTVQESQKLV 470
+T+ E +K+V
Sbjct: 253 HTMDEQRKIV 262
>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
weak similarity to merozoite surface protein 3 alpha
(GI:27596802) [Plasmodium vivax]
Length = 807
Score = 27.1 bits (57), Expect = 6.4
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 273 AKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLREKLQAAVQNTVQ 452
AKSL + KAKE EQ++ L A ++E A E+L A ++
Sbjct: 563 AKSLAEVAREELRKAKEEAEQAKAGASTMESRLFAAQKEIE--AAKASERLALAAIKALE 620
Query: 453 ESQ 461
ES+
Sbjct: 621 ESE 623
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 272 EGVELLSTDSEPSFQALLKSCASFDLVSEL 183
EGVE + D+ +F+ LL+SC L+ ++
Sbjct: 574 EGVEPVIHDANEAFKQLLESCGKLQLLDKM 603
>At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966,
gb|R65511, gb|T42324 and gb|T20569 come from this gene
Length = 571
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = +3
Query: 228 LEGRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNA 404
+ G L +R K+ + D A +AL + N+E+ +E + + E+N+
Sbjct: 397 MRGSLEIRLAAALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKLLQQEAEENS 455
>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
protein / kinesin motor family protein similar to
kinesin-like protein GB:CAB41097 GI:5541717 from
[Arabidopsis thaliana]; contains Pfam profiles PF00225:
Kinesin motor domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 894
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 LEGRLRVRAQ-QLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNA 404
+E L+++ + + +K L+ L + + L+ ++ER + + +VEKN
Sbjct: 402 VENMLKIKEEFDYKSLSKKLEVQLDKVIAENERQLKAFDDDVERINRQAQNRISEVEKNF 461
Query: 405 TDLREKLQAAVQNTVQESQK 464
+ EK + Q ES K
Sbjct: 462 AEALEKEKLKCQMEYMESVK 481
>At5g63640.1 68418.m07990 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 447
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 228 LEGRLRV--RAQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEK 398
L GR+ V R+ N + +L+ +NG K L+ S N E ++ +AH +E+
Sbjct: 265 LSGRITVPSRSTTSNGYHSNLEPVRPISNGDQKRELKASNANTESSSFISNRAHLKLEE 323
>At3g60620.1 68416.m06783 phosphatidate cytidylyltransferase family
protein contains Pfam profile: PF01148 phosphatidate
cytidylyltransferase
Length = 399
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 240 LRVRAQQLNAFAKSLQGALGD-ANGKAKEALEQSRQNIERTA---EELRKAHPDVEKNAT 407
+ V + + A A++ +GD AN K + ++Q QN+E + ++ +K+ +K T
Sbjct: 55 ISVNRRVITAVARAESNQIGDDANSKEEHNIDQELQNVEEDSSLDDQKQKSRSQFKKRVT 114
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 26.6 bits (56), Expect = 8.5
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +3
Query: 201 KGRTGLQQGLEGRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKA 380
K + L + LE ++ A L + LQ +LG+A +KEA +++ ++ L K
Sbjct: 606 KNTSILSRELE-KVNTHASNLEDEKEVLQRSLGEAKNASKEA-KENVEDAHILVMSLGKE 663
Query: 381 HPDVEKNATDLREKLQAA 434
+EK L E L +A
Sbjct: 664 REVLEKKVKKLEEDLGSA 681
>At2g46930.1 68415.m05862 pectinacetylesterase, putative similar to
pectinacetylesterase precursor GI:1431629 from [Vigna
radiata]
Length = 416
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 263 ELLSTDSEPSFQALLKSCASFDLVSELNC 177
ELLS + + QALL C++ L S L+C
Sbjct: 180 ELLSKGMQKAEQALLSGCSAGGLASILHC 208
>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
myosin heavy chain (GI:1408194) {Placopecten
magellanicus}; similar to Myosin heavy chain, clone 203
(Fragment) (SP:P39922){Hydra attenuata}; contains one
transmembrane domain
Length = 323
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = +3
Query: 240 LRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATDLRE 419
LR ++ K L+ LG + KE E++++ R EE+R+ + EK DL+E
Sbjct: 156 LRTVKEENEKRMKELESKLGAL--EVKELDEKNKKF--RAEEEMREKIDNKEKEVHDLKE 211
Query: 420 KLQAAVQNTVQESQKL 467
K+++ + + +L
Sbjct: 212 KIKSLESDVAKGKTEL 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,462,981
Number of Sequences: 28952
Number of extensions: 156654
Number of successful extensions: 926
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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