Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0538
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    27   2.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   5.1  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  

>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 284 VTRYWRHVELNNINIFVVYIYSIVESSQ 367
           V+R W+ +  NN+NI + +I+ + E+ +
Sbjct: 277 VSRLWKEILDNNLNIAIHHIFKLSEAKE 304


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 429 DTEPSENLAFENLCFIY-LFCNWELSTI 349
           + E  ENL FE+ C IY L C +  + I
Sbjct: 93  ERESFENLIFEHACLIYRLACTYHTTAI 120


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 528 EIEHSVPVSRLYV-DMISETNFKYLQELKFKNVS 626
           E E  + V+ ++V DM+  ++  YL E  F+N S
Sbjct: 97  EAEGLLEVTNMFVTDMLRHSHLNYLSEADFENCS 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,051
Number of Sequences: 5004
Number of extensions: 50603
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)