Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0538
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           29   4.1  
SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)                   28   5.4  
SB_17984| Best HMM Match : DUF662 (HMM E-Value=4.7)                    28   5.4  

>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 518  NILYYYLQYKLRVHTSRRTDGQSNRSIN 435
            N  YYY+Q + RV   RR + Q  ++I+
Sbjct: 1118 NFSYYYIQARTRVQQPRRANNQHQKTIS 1145


>SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 518 NILYYYLQYKLRVHTSRRTDGQSNRSIN 435
           N  YYY+Q + RV   RR + Q  ++I+
Sbjct: 209 NFSYYYIQARTRVQQPRRANNQHQKTIS 236


>SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)
          Length = 906

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 35  RDGWGLCNNGGFILLTICYLTI*MLTISLVHVVTVSSETY 154
           + G G CN+ G +LLT+C     +LT ++  + T +  T+
Sbjct: 73  KHGVGKCNSNGLLLLTLCARHGLLLTNTMFQLPTRNKTTW 112


>SB_17984| Best HMM Match : DUF662 (HMM E-Value=4.7)
          Length = 301

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 35  RDGWGLCNNGGFILLTICYLTI*MLTISLVHVVTVSSETY 154
           + G G CN+ G +LLT+C     +LT ++  + T +  T+
Sbjct: 51  KHGVGKCNSNGLLLLTLCARHGLLLTNTMFQLPTRNKTTW 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,376,018
Number of Sequences: 59808
Number of extensions: 366098
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)