BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0538 (627 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U97550-5|AAK18982.2| 497|Caenorhabditis elegans Hypothetical pr... 29 2.1 AC024761-10|AAP13759.1| 501|Caenorhabditis elegans Cop-9 signal... 28 4.8 >U97550-5|AAK18982.2| 497|Caenorhabditis elegans Hypothetical protein T20F7.7 protein. Length = 497 Score = 29.5 bits (63), Expect = 2.1 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Frame = -3 Query: 358 FNNRINIHHKNIDIIQFNMTP--VTRDVYKLSPLEVSLDQTALACLNNNRRRFLAIE*PF 185 F R + H N +I F P V++ VYKL L +S T L CL N +I P Sbjct: 21 FGIRQALVHDN-QVITFEEIPQLVSKLVYKLLELGISQGDTILVCLPN------SIWYPL 73 Query: 184 LVLSCMSL 161 L LSC + Sbjct: 74 LFLSCAKI 81 >AC024761-10|AAP13759.1| 501|Caenorhabditis elegans Cop-9 signalosome subunit protein 3 protein. Length = 501 Score = 28.3 bits (60), Expect = 4.8 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Frame = -3 Query: 595 YLKLVSEIISTYKRDTGTECSISYDR--IFYIIIYNTNFEFTPRGGQTDNQTEALTDRHG 422 +LKLV EII RD G C ++ I II PR G N LT HG Sbjct: 127 HLKLVPEIIFPLLRDVGLYCLEKKNKPEIGQRIIMKALGSMFPRNG--SNAPNVLTSAHG 184 Query: 421 TI 416 + Sbjct: 185 VL 186 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,919,406 Number of Sequences: 27780 Number of extensions: 288143 Number of successful extensions: 651 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 612 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 651 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1374536540 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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