Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0538
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9 signal...    28   4.8  

>U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical
           protein T20F7.7 protein.
          Length = 497

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 358 FNNRINIHHKNIDIIQFNMTP--VTRDVYKLSPLEVSLDQTALACLNNNRRRFLAIE*PF 185
           F  R  + H N  +I F   P  V++ VYKL  L +S   T L CL N      +I  P 
Sbjct: 21  FGIRQALVHDN-QVITFEEIPQLVSKLVYKLLELGISQGDTILVCLPN------SIWYPL 73

Query: 184 LVLSCMSL 161
           L LSC  +
Sbjct: 74  LFLSCAKI 81


>AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9
           signalosome subunit protein 3 protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -3

Query: 595 YLKLVSEIISTYKRDTGTECSISYDR--IFYIIIYNTNFEFTPRGGQTDNQTEALTDRHG 422
           +LKLV EII    RD G  C    ++  I   II        PR G   N    LT  HG
Sbjct: 127 HLKLVPEIIFPLLRDVGLYCLEKKNKPEIGQRIIMKALGSMFPRNG--SNAPNVLTSAHG 184

Query: 421 TI 416
            +
Sbjct: 185 VL 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,919,406
Number of Sequences: 27780
Number of extensions: 288143
Number of successful extensions: 651
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)