Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0538
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.60 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.3  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 557 TRHRNGMFYFVR*NILYYYLQYK 489
           T  R+  FY +  NIL Y+L+YK
Sbjct: 413 TSMRDPAFYMLYQNILSYFLRYK 435


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 187 FLVLSCMSLYIICLRRYRYNMNQ*DS*HLDS*IANS**YKSAIITQPPPV 38
           FL+LS  S Y++ +  Y+++    D    +S  A+S    S  +T PP +
Sbjct: 12  FLLLSIASTYVVSVAGYKHSRRHRDFTVAESYDASSSNSDSLSMTIPPSI 61


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -3

Query: 424 GTIRKFSIREFVFYLFIL*LGTFNNRINIHHKNIDIIQFNMTPVTRD 284
           G +      E++  L        NN +N+ H N  I+  N+  + R+
Sbjct: 365 GRVNNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQILGANVNDLIRN 411


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 557 TRHRNGMFYFVR*NILYYYLQYK 489
           T  R+  FY +   IL Y+L+YK
Sbjct: 413 TSMRDPAFYMLYQKILSYFLRYK 435


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 229 DTREQSDRGKLQGGIICKR 285
           DT+   + G+L  GI+CK+
Sbjct: 86  DTKVMVEHGELVMGILCKK 104


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 395 ICVLFIYFVTGNFQQ 351
           +C LFIY VT   ++
Sbjct: 11  VCALFIYTVTAETEE 25


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 395 ICVLFIYFVTGNFQQ 351
           +C LFIY VT   ++
Sbjct: 11  VCALFIYTVTAETEE 25


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 51  SPHPSRAVEESTGGS 7
           SP P ++ E STG S
Sbjct: 352 SPEPPKSSESSTGSS 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,551
Number of Sequences: 438
Number of extensions: 4014
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)