Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0537
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 43 4e-05
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 38 0.002
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 27 2.8
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 27 3.7
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.9
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 6.4
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 26 6.4
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 8.5
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 8.5
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 43.2 bits (97), Expect = 4e-05
Identities = 16/59 (27%), Positives = 35/59 (59%)
Frame = +1
Query: 85 WRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYLITPSEKSVML 261
W+VLI D+ +S+ ++ D+ G+T+ +I R+P+ + IY + P+++++ L
Sbjct: 46 WKVLIFDKAGSETISSVLRISDLRKHGVTVHMNITSFRQPIADVPAIYFVQPTQENIEL 104
Score = 29.5 bits (63), Expect = 0.52
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 261 LINDFAVGNRIMYRAAHVFFTEACPDIL---FNEL-SRSQIAKYIKTLKEINIAFIPYEQ 428
+I D + G +Y +A+V F+ L F EL S++ + I + + + ++ E
Sbjct: 105 IIEDLSKG---LYESAYVCFSSTISRALLEQFAELASKTNTSHMIHQVYDQYLNYVVLES 161
Query: 429 QVFSLDSPETFQCMYNPA 482
FSL P+ F +NP+
Sbjct: 162 DFFSLQLPKIFHTFHNPS 179
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 82 EWRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYLITPSEKSV 255
+W+VLIVD + +++ +H + E I VE + R P + + +Y++ EK V
Sbjct: 23 KWKVLIVDTKTADIINHFITIHSLLEEKIAAVEILENPRTPNSSFEALYILHSEEKLV 80
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 109 LSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMD 219
++M +++C K H+I E L+ D K+ E CT++
Sbjct: 722 VTMDWINSCLKTHEIVDEEPYLLNDPEKELELGCTLE 758
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 246 LRRSDEVNTIHSA*RFTFLVNVLNQGNSFSR 154
L+RSD N + + + FL++++++ N+ SR
Sbjct: 164 LQRSDIANAVSKSEMYDFLIDIISKDNNNSR 194
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 128 QLAAKCMIYLLKELPWLRTFTRNVNLYALWMVFTSSLRLRNQSCSDQ 268
QLA +CM Y+++ LP L L+++ + + + R + C+DQ
Sbjct: 804 QLALECMNYIMETLPHLLGIKE--ILFSVLELSSLLWKARTEECTDQ 848
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -3
Query: 209 HKGSRFL*MSSTKVIPSADISCILQQAETMR 117
HK ++F+ S + + +AD + +LQ+ E +R
Sbjct: 104 HKAAKFVSEKSLEKVSTADNNLVLQELENLR 134
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/58 (20%), Positives = 32/58 (55%)
Frame = +1
Query: 88 RVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYLITPSEKSVML 261
++L++++ + ++VS+C ++ + I L + KRE L + + + P+ ++ L
Sbjct: 22 KILLLEEDTTKIVSSCITQSNLLEQQIYLTVLLGNKREKLRHLKCVAFLRPTPTTLRL 79
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 332 TSFSEENMSSSVHDAVTDSKVIDQSMTDFSDGV 234
T+ S+EN S+ VH S+ ++ + TD GV
Sbjct: 182 TAVSQENASNGVHSDFHPSEELNNANTDGRTGV 214
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 247 KSVML*SMTLLSVTASCTELLMFSSLKLVLIFCLMSYP 360
KSV+ + + SV +C E SS+ L CL+ +P
Sbjct: 488 KSVLRKTDNVESVLNACVEKYTLSSITCSLRLCLLEFP 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,097
Number of Sequences: 5004
Number of extensions: 62094
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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