Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0537
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429... 76 3e-14
06_01_0256 - 1905767-1905901,1906375-1906407,1906489-1906585,190... 65 5e-11
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 35 0.059
03_05_0348 - 23346182-23348022,23348118-23348148 32 0.41
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 30 1.7
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838... 30 2.2
06_03_0565 - 22308074-22309510,22309670-22309723 29 2.9
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 28 6.7
01_01_0203 - 1756812-1757032,1757646-1757730 28 6.7
12_01_0769 - 6978613-6978627,6978699-6978779,6978955-6978958,698... 28 8.9
>02_03_0084 -
15041261-15041437,15041625-15041765,15042857-15042946,
15043111-15043201,15043953-15044155,15045361-15045438,
15045535-15045651,15046111-15046161,15046405-15046500,
15046726-15046742,15046938-15047064,15050585-15050681,
15051565-15051638,15051910-15051993,15052099-15052290,
15054191-15054319,15055607-15055639,15055747-15055843,
15055940-15055990,15057494-15057564,15058305-15058455,
15058625-15058703,15059265-15059346,15060335-15060335,
15060565-15060620,15060969-15061018,15061511-15061580
Length = 834
Score = 76.2 bits (179), Expect = 3e-14
Identities = 34/87 (39%), Positives = 61/87 (70%)
Frame = +1
Query: 88 RVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYLITPSEKSVML*S 267
RVLI+D+L+++++S CKM DI+ EG++LVED++K+R+PL ++D IY I P+++ +
Sbjct: 59 RVLIMDKLTVKIISCSCKMADITEEGVSLVEDLYKRRQPLPSLDAIYFIQPTKEK----N 114
Query: 268 MTLLSVTASCTELLMFSSLKLVLIFCL 348
+ + + C +L+ S L L++ CL
Sbjct: 115 VGVSGMLVRCIDLMPMSMLMLLVYICL 141
>06_01_0256 -
1905767-1905901,1906375-1906407,1906489-1906585,
1907080-1907158,1907373-1907454,1907649-1907707,
1907821-1907893
Length = 185
Score = 65.3 bits (152), Expect = 5e-11
Identities = 28/68 (41%), Positives = 49/68 (72%)
Frame = +1
Query: 58 KGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYLIT 237
K KE+ + W+VLI+D+ ++R+++ CKM +I+ GI+LVED+ K+REP+ +MD IY +
Sbjct: 35 KDKET-KSSWKVLIMDKFTVRIMAYACKMAEITDAGISLVEDLFKRREPMPSMDAIYFLQ 93
Query: 238 PSEKSVML 261
P ++ +
Sbjct: 94 PLKEKAYI 101
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 35.1 bits (77), Expect = 0.059
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +1
Query: 157 AEGITLVEDIHKKREPLCTMDGIYLITPSEKSVML 261
A ++VED++ +R+PL MD IY I P+++++ +
Sbjct: 453 ASSDSVVEDLYMRRQPLPLMDAIYFIQPTKENIRI 487
>03_05_0348 - 23346182-23348022,23348118-23348148
Length = 623
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/68 (20%), Positives = 35/68 (51%)
Frame = +1
Query: 52 GPKGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYL 231
G G +++L++D + +++ ++ ++ G+TL +I K R+ + +YL
Sbjct: 32 GGVGSAEEEEAYKILVMDSPCVALLAPVLRVGELRRHGVTLHLNIDKARQQVPDAPAVYL 91
Query: 232 ITPSEKSV 255
+ P+ +V
Sbjct: 92 LRPTAANV 99
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 294 MYRAAHVFFTEACPDILFNELSR----SQIAKYIKTLKEINIAFIPYEQQVFSLDSPETF 461
+Y + H+ F+ P L L+ S+ A + + + + F+ E+ +FSL P +
Sbjct: 110 LYASFHLNFSTCVPRALLERLASATAASRSAHRVARVADQYLDFVCLEEGLFSLAQPRAY 169
Query: 462 QCMYNPALAQ 491
+ +PA A+
Sbjct: 170 VALNDPAAAE 179
>05_07_0173 + 28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 19 QKIMNEVIRYRGPKGKESARIEWRVLIVDQLSMRMVSACCKMHDISAE 162
+K++ RYR +G S+R++W L L + C +M D+ A+
Sbjct: 927 KKLLMIYTRYRAARGARSSRVDWNSL--SDLPASPAACCRRMSDLRAK 972
>02_03_0030 -
14083117-14083166,14083620-14083689,14083777-14083857,
14083940-14084065,14084916-14085143,14085246-14085325,
14086567-14086768,14086857-14086946
Length = 308
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 88 RVLIVDQLSMRMVSACCKMHDISAEGITLVEDI---HKKREPLCTMDGIYLITPSEKSV 255
+VL++D ++ MVS D+ + + LVE + RE + + +Y + PS +V
Sbjct: 22 KVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDNASSSRESMAHLKAVYFLRPSSDNV 80
>06_03_0565 - 22308074-22309510,22309670-22309723
Length = 496
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -1
Query: 553 AERGTEGRDLFSNTFMFALRVCARAGLYMHWNVSGESNENTCCSYGMKAMLISFNVLIYL 374
A RG +GR F N F+F L V A + + + V E N+ +G+ + I ++ +++
Sbjct: 86 APRGRKGRSTFFNYFVFCLSVGAL--IAVTFAVWVEDNKGWQWGFGISTIAILLSIPVFV 143
Query: 373 A 371
A
Sbjct: 144 A 144
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 149 IYLLKELPWLRTFTRNVNLYALWMVFTSSLRLRNQS 256
+Y+L+ W+R T+ ++ Y W FT + RN+S
Sbjct: 667 LYILRLCSWMRATTKEISKYETW--FTLTTLERNKS 700
>01_01_0203 - 1756812-1757032,1757646-1757730
Length = 101
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 133 CCKMHDISAEGITLVEDIHKKREPLCTMDGIYLITPSEK 249
CC + S G+ ED+ KK +P+C + P +K
Sbjct: 46 CCSNCNFSFSGLYTCEDVVKKCDPVCKSCAVVKTHPVKK 84
>12_01_0769 -
6978613-6978627,6978699-6978779,6978955-6978958,
6981491-6981570,6985123-6985247,6985703-6985789,
6985980-6986097
Length = 169
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 527 IATLCATL---GEYPSVRYRSDWERNVELAQLIQQKLDAYKADETNYGAKDQKKPVLS 691
++ +CA + G YP+ R+D ER LI + + + + E D+++PV++
Sbjct: 49 MSAVCADVIHCGVYPAFMSRNDMERERYYTNLINDESNHFGSSEMGSQYDDEQEPVVN 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,217,543
Number of Sequences: 37544
Number of extensions: 383150
Number of successful extensions: 954
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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