Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0537
(739 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30587| Best HMM Match : IncA (HMM E-Value=0.42) 62 6e-10
SB_24205| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_20838| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_9778| Best HMM Match : DMA (HMM E-Value=8.4) 30 2.3
SB_3724| Best HMM Match : VWA (HMM E-Value=0.00054) 29 3.0
SB_33023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_4754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 9.1
SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3) 28 9.1
>SB_30587| Best HMM Match : IncA (HMM E-Value=0.42)
Length = 272
Score = 61.7 bits (143), Expect = 6e-10
Identities = 26/51 (50%), Positives = 38/51 (74%)
Frame = +2
Query: 509 ERIAEQIATLCATLGEYPSVRYRSDWERNVELAQLIQQKLDAYKADETNYG 661
E+IAEQ+ATLCA+LGE+PS+RY+ D + V A ++ +LD YK D+ + G
Sbjct: 28 EKIAEQLATLCASLGEFPSIRYKPDNPKMVGFANQVKARLDVYKRDDPSIG 78
>SB_24205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +1
Query: 172 LVEDIHKKREPLCTMDGIYLITPSEKSVML 261
+VE++ K+REPL ++ IY++TP E S+ L
Sbjct: 63 IVENLEKRREPLPQLEAIYILTPEEDSISL 92
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 291 IMYRAAHVFFTEACPDILFNELSRSQIAKYIKTLKEINIAFIPY 422
+ Y+ AH+FFTE CPD L +L + +K L+ I F+ Y
Sbjct: 102 LKYKGAHLFFTEVCPDSLLVQLQGIKRSK----LRGITRKFVDY 141
>SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 584 WERNVELAQLIQQKLDAYKADETNYGAKDQKKPVLSFSFWTADSIACLRYY 736
W R +E+ L++ L+ E ++G +D KK + + A SI CL YY
Sbjct: 102 WLRKMEVNVLLEGYLEKCSTAE-DHGKRDWKKRYFVYKHFLASSIKCLEYY 151
>SB_20838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 608 ELTQHCVPNH--CGIERKDIRRAWHRGSRFVQQYVH 507
E+T H H G ER+DIRR + +FV+ Y+H
Sbjct: 682 EMTIHVYDQHEAVGEEREDIRRRFEGVIQFVENYLH 717
>SB_9778| Best HMM Match : DMA (HMM E-Value=8.4)
Length = 145
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 608 ELTQHCVPNH--CGIERKDIRRAWHRGSRFVQQYVH 507
E+T H H G ER+DIRR + +FV+ Y+H
Sbjct: 105 EMTIHVYDQHEAVGEEREDIRRRFEGVIQFVENYLH 140
>SB_3724| Best HMM Match : VWA (HMM E-Value=0.00054)
Length = 121
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 155 DISCILQQAETMRMDSWSTIKTLHSILADSLPLGPR 48
D+ +L + T+ + WS KTL L D L +GPR
Sbjct: 10 DLVLLLDSSYTIAEELWSKEKTLVRNLVDRLDIGPR 45
>SB_33023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 600 STLRSQSLRYRTEGYSPSVAQRVAICSAIRSCL 502
ST R+ +L+YR E Y+P + R + +AIR+ L
Sbjct: 120 STWRTTTLKYRIENYTPDL-PREEVDNAIRNAL 151
>SB_4754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 564 EGYSPSVAQRVAICSAIRSC-LRYESVLELGCTCIGMFQVNPTKIPA 427
+G + S V + ++++ L YES+L LG G F P K P+
Sbjct: 198 DGEAVSCRSMVYVSGSVQAMYLSYESMLNLGILSHGFFSAEPLKNPS 244
>SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +1
Query: 76 RIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVED--IHKKREPLCTMDGIYLITPSEK 249
R EW +L + S R + M+ +SA+ ++ED + + LCT + PS+
Sbjct: 730 RKEWVILSLTPFSERCLQITVDMYRVSADKPAVIEDKVLERIIRALCTPMRLKYDCPSQS 789
Query: 250 SVML*SMTLLSV 285
+ L +LL+V
Sbjct: 790 TWKLAVESLLTV 801
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 317 ENMSSSVHDAVTDSKVIDQSMTDF 246
E+ SS+ D VTD+K D+ +TD+
Sbjct: 459 EDRSSAYFDCVTDTKASDEGLTDW 482
>SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)
Length = 356
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 154 SAEGITLVEDIHKKREPLCTMDGIYLITPSEKSVML*SMTLLSVTASCT 300
S G VE + + PLC D I L TP + L +TLL ++ T
Sbjct: 100 SGSGCAAVEVMSTQTCPLCLEDSISLATPQAQGCTL-GLTLLDLSQKWT 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,795,202
Number of Sequences: 59808
Number of extensions: 462040
Number of successful extensions: 1165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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