Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0537
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49829-11|AAP40539.1| 93|Caenorhabditis elegans Uncoordinated ... 104 8e-23
U49829-10|AAA93389.2| 591|Caenorhabditis elegans Uncoordinated ... 103 1e-22
S66176-1|AAB28570.1| 591|Caenorhabditis elegans UNC-18 protein. 103 1e-22
U49829-9|AAQ81273.1| 673|Caenorhabditis elegans Uncoordinated p... 97 1e-20
S34207-1|AAB21818.1| 673|Caenorhabditis elegans unc-18 protein. 97 1e-20
AF036706-7|AAK39282.1| 562|Caenorhabditis elegans Hypothetical ... 66 2e-11
Z35640-5|CAO82046.1| 689|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z35640-4|CAA84704.1| 707|Caenorhabditis elegans Hypothetical pr... 41 0.001
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 32 0.49
AF125971-3|AAN73292.1| 152|Caenorhabditis elegans Hypothetical ... 31 0.64
AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical ... 31 0.64
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 30 2.0
U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical p... 29 3.4
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p... 29 3.4
U97012-9|AAK39142.2| 995|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical... 28 6.0
AF039712-2|AAK21401.1| 401|Caenorhabditis elegans Hypothetical ... 28 7.9
>U49829-11|AAP40539.1| 93|Caenorhabditis elegans Uncoordinated
protein 18, isoform b protein.
Length = 93
Score = 104 bits (249), Expect = 8e-23
Identities = 49/85 (57%), Positives = 65/85 (76%)
Frame = +1
Query: 1 LKALVGQKIMNEVIRYRGPKGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVE 180
LK +VG K++N+VIR P K R W VLIVD L+MRM+S+CCKMH+I EGIT+VE
Sbjct: 3 LKQIVGHKLLNDVIR---PLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGITIVE 59
Query: 181 DIHKKREPLCTMDGIYLITPSEKSV 255
D++K+REPL T++ IYLI P+ +SV
Sbjct: 60 DLNKRREPLPTLEAIYLIAPTAESV 84
>U49829-10|AAA93389.2| 591|Caenorhabditis elegans Uncoordinated
protein 18, isoform a protein.
Length = 591
Score = 103 bits (248), Expect = 1e-22
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +1
Query: 1 LKALVGQKIMNEVIRYRGPKGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVE 180
LK +VG K++N+VIR P K R W VLIVD L+MRM+S+CCKMH+I EGIT+VE
Sbjct: 3 LKQIVGHKLLNDVIR---PLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGITIVE 59
Query: 181 DIHKKREPLCTMDGIYLITPSEKSV 255
D++K+REPL T++ IYLI P+ +S+
Sbjct: 60 DLNKRREPLPTLEAIYLIAPTAESI 84
Score = 97.1 bits (231), Expect = 1e-20
Identities = 46/72 (63%), Positives = 55/72 (76%)
Frame = +3
Query: 261 LINDFAVGNRIMYRAAHVFFTEACPDILFNELSRSQIAKYIKTLKEINIAFIPYEQQVFS 440
LI D+ N +Y+ AHVFFTEAC D LF+ LS+S A++IKTLKEINIAF PYE QVF+
Sbjct: 87 LIQDYCARN--LYKCAHVFFTEACSDQLFSTLSKSAAARFIKTLKEINIAFTPYESQVFN 144
Query: 441 LDSPETFQCMYN 476
LDSP+TF YN
Sbjct: 145 LDSPDTFFLYYN 156
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/51 (76%), Positives = 47/51 (92%)
Frame = +2
Query: 509 ERIAEQIATLCATLGEYPSVRYRSDWERNVELAQLIQQKLDAYKADETNYG 661
ERIAEQIAT+CATLGEYPS+RYR+D+ERNVEL L++QKLDAYKAD+ + G
Sbjct: 168 ERIAEQIATVCATLGEYPSLRYRADFERNVELGHLVEQKLDAYKADDPSMG 218
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/26 (65%), Positives = 24/26 (92%)
Frame = +1
Query: 661 GEGPEKARSQLLVLDRGFDCVSPLLH 738
GEG +KARSQL+++DRG+D ++PLLH
Sbjct: 218 GEGADKARSQLIIIDRGYDAITPLLH 243
>S66176-1|AAB28570.1| 591|Caenorhabditis elegans UNC-18 protein.
Length = 591
Score = 103 bits (248), Expect = 1e-22
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +1
Query: 1 LKALVGQKIMNEVIRYRGPKGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVE 180
LK +VG K++N+VIR P K R W VLIVD L+MRM+S+CCKMH+I EGIT+VE
Sbjct: 3 LKQIVGHKLLNDVIR---PLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGITIVE 59
Query: 181 DIHKKREPLCTMDGIYLITPSEKSV 255
D++K+REPL T++ IYLI P+ +S+
Sbjct: 60 DLNKRREPLPTLEAIYLIAPTAESI 84
Score = 97.1 bits (231), Expect = 1e-20
Identities = 46/72 (63%), Positives = 55/72 (76%)
Frame = +3
Query: 261 LINDFAVGNRIMYRAAHVFFTEACPDILFNELSRSQIAKYIKTLKEINIAFIPYEQQVFS 440
LI D+ N +Y+ AHVFFTEAC D LF+ LS+S A++IKTLKEINIAF PYE QVF+
Sbjct: 87 LIQDYCARN--LYKCAHVFFTEACSDQLFSTLSKSAAARFIKTLKEINIAFTPYESQVFN 144
Query: 441 LDSPETFQCMYN 476
LDSP+TF YN
Sbjct: 145 LDSPDTFFLYYN 156
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/51 (76%), Positives = 47/51 (92%)
Frame = +2
Query: 509 ERIAEQIATLCATLGEYPSVRYRSDWERNVELAQLIQQKLDAYKADETNYG 661
ERIAEQIAT+CATLGEYPS+RYR+D+ERNVEL L++QKLDAYKAD+ + G
Sbjct: 168 ERIAEQIATVCATLGEYPSLRYRADFERNVELGHLVEQKLDAYKADDPSMG 218
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/26 (65%), Positives = 24/26 (92%)
Frame = +1
Query: 661 GEGPEKARSQLLVLDRGFDCVSPLLH 738
GEG +KARSQL+++DRG+D ++PLLH
Sbjct: 218 GEGADKARSQLIIIDRGYDAITPLLH 243
>U49829-9|AAQ81273.1| 673|Caenorhabditis elegans Uncoordinated
protein 18, isoform c protein.
Length = 673
Score = 97.1 bits (231), Expect = 1e-20
Identities = 46/72 (63%), Positives = 55/72 (76%)
Frame = +3
Query: 261 LINDFAVGNRIMYRAAHVFFTEACPDILFNELSRSQIAKYIKTLKEINIAFIPYEQQVFS 440
LI D+ N +Y+ AHVFFTEAC D LF+ LS+S A++IKTLKEINIAF PYE QVF+
Sbjct: 169 LIQDYCARN--LYKCAHVFFTEACSDQLFSTLSKSAAARFIKTLKEINIAFTPYESQVFN 226
Query: 441 LDSPETFQCMYN 476
LDSP+TF YN
Sbjct: 227 LDSPDTFFLYYN 238
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +1
Query: 19 QKIMNEVIRYRGPKGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKR 198
+K++N+VIR P K R W VLIVD L+MRM+S+CCKMH+I EGIT+VED++K+R
Sbjct: 91 RKLLNDVIR---PLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGITIVEDLNKRR 147
Query: 199 EPLCTMDGIYLITPSEKSV 255
EPL T++ IYLI P+ +S+
Sbjct: 148 EPLPTLEAIYLIAPTAESI 166
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/51 (76%), Positives = 47/51 (92%)
Frame = +2
Query: 509 ERIAEQIATLCATLGEYPSVRYRSDWERNVELAQLIQQKLDAYKADETNYG 661
ERIAEQIAT+CATLGEYPS+RYR+D+ERNVEL L++QKLDAYKAD+ + G
Sbjct: 250 ERIAEQIATVCATLGEYPSLRYRADFERNVELGHLVEQKLDAYKADDPSMG 300
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/26 (65%), Positives = 24/26 (92%)
Frame = +1
Query: 661 GEGPEKARSQLLVLDRGFDCVSPLLH 738
GEG +KARSQL+++DRG+D ++PLLH
Sbjct: 300 GEGADKARSQLIIIDRGYDAITPLLH 325
>S34207-1|AAB21818.1| 673|Caenorhabditis elegans unc-18 protein.
Length = 673
Score = 97.1 bits (231), Expect = 1e-20
Identities = 46/72 (63%), Positives = 55/72 (76%)
Frame = +3
Query: 261 LINDFAVGNRIMYRAAHVFFTEACPDILFNELSRSQIAKYIKTLKEINIAFIPYEQQVFS 440
LI D+ N +Y+ AHVFFTEAC D LF+ LS+S A++IKTLKEINIAF PYE QVF+
Sbjct: 169 LIQDYCARN--LYKCAHVFFTEACSDQLFSTLSKSAAARFIKTLKEINIAFTPYESQVFN 226
Query: 441 LDSPETFQCMYN 476
LDSP+TF YN
Sbjct: 227 LDSPDTFFLYYN 238
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +1
Query: 19 QKIMNEVIRYRGPKGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKR 198
+K++N+VIR P K R W VLIVD L+MRM+S+CCKMH+I EGIT+VED++K+R
Sbjct: 91 RKLLNDVIR---PLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGITIVEDLNKRR 147
Query: 199 EPLCTMDGIYLITPSEKSV 255
EPL T++ IYLI P+ +S+
Sbjct: 148 EPLPTLEAIYLIAPTAESI 166
Score = 88.6 bits (210), Expect = 4e-18
Identities = 39/51 (76%), Positives = 47/51 (92%)
Frame = +2
Query: 509 ERIAEQIATLCATLGEYPSVRYRSDWERNVELAQLIQQKLDAYKADETNYG 661
ERIAEQIAT+CATLGEYPS+RYR+D+ERNVEL L++QKLDAYKAD+ + G
Sbjct: 250 ERIAEQIATVCATLGEYPSLRYRADFERNVELGHLVEQKLDAYKADDPSMG 300
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/26 (65%), Positives = 24/26 (92%)
Frame = +1
Query: 661 GEGPEKARSQLLVLDRGFDCVSPLLH 738
GEG +KARSQL+++DRG+D ++PLLH
Sbjct: 300 GEGADKARSQLIIIDRGYDAITPLLH 325
>AF036706-7|AAK39282.1| 562|Caenorhabditis elegans Hypothetical
protein T07A9.10 protein.
Length = 562
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/85 (35%), Positives = 59/85 (69%)
Frame = +1
Query: 1 LKALVGQKIMNEVIRYRGPKGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVE 180
L+ LV ++I+ ++R + K R ++ VL++D+ +M +V++C ++++ EG+TLVE
Sbjct: 2 LRELVKKQIIENILRPQNYDSKLGHR-KFSVLVLDKSAMVVVNSCLSLNEVFEEGVTLVE 60
Query: 181 DIHKKREPLCTMDGIYLITPSEKSV 255
D+ + REP+ +MD IY+I+P +S+
Sbjct: 61 DLTRNREPMPSMDAIYIISPVAESI 85
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Frame = +3
Query: 261 LINDFAVGNRI----MYRAAHVFFTEACPDILFNELSRSQIAKYIKTLKEINIAFIPYEQ 428
LINDF+ + YR+AH+FF + C D LF +LS+S K+IKTLKE+N+ P E
Sbjct: 88 LINDFSRKTKFNPGNSYRSAHIFFLDPCCDELFEKLSKSPAVKWIKTLKELNLNLKPVES 147
Query: 429 QVFSLDS 449
Q+F+++S
Sbjct: 148 QIFTVNS 154
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/42 (38%), Positives = 31/42 (73%)
Frame = +2
Query: 512 RIAEQIATLCATLGEYPSVRYRSDWERNVELAQLIQQKLDAY 637
+ A+ I +LCATL +P++R++SD+ ++ E+ Q ++QKL +
Sbjct: 162 KTADGIVSLCATLNIHPTLRFQSDFAQSSEICQRVEQKLKEF 203
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 685 SQLLVLDRGFDCVSPLLH 738
++L+VLDR FD VSPLLH
Sbjct: 212 AELVVLDRSFDLVSPLLH 229
>Z35640-5|CAO82046.1| 689|Caenorhabditis elegans Hypothetical
protein F43D9.3b protein.
Length = 689
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/64 (28%), Positives = 37/64 (57%)
Frame = +1
Query: 85 WRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYLITPSEKSVML* 264
W+VL++D+ ++S + + G+TL I +REPL + +Y ++P+++++ L
Sbjct: 64 WKVLVLDRTGQDIISPLLPVKQLRELGVTLHLLIGARREPLTDVPAVYFVSPNDENIDLM 123
Query: 265 SMTL 276
S L
Sbjct: 124 SEDL 127
>Z35640-4|CAA84704.1| 707|Caenorhabditis elegans Hypothetical
protein F43D9.3a protein.
Length = 707
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/64 (28%), Positives = 37/64 (57%)
Frame = +1
Query: 85 WRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYLITPSEKSVML* 264
W+VL++D+ ++S + + G+TL I +REPL + +Y ++P+++++ L
Sbjct: 64 WKVLVLDRTGQDIISPLLPVKQLRELGVTLHLLIGARREPLTDVPAVYFVSPNDENIDLM 123
Query: 265 SMTL 276
S L
Sbjct: 124 SEDL 127
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
protein B0207.5 protein.
Length = 3279
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 264 INDFAVGNRIMY-RAAHVFFT-EACPDILFNELSRSQIAKYIK 386
+N+ + + Y R + +T ++C DI+ NELSR + KY+K
Sbjct: 636 VNELSEQEYLQYKRRCRIDYTHKSCKDIVLNELSREEYKKYLK 678
>AF125971-3|AAN73292.1| 152|Caenorhabditis elegans Hypothetical
protein Y4C6B.4b protein.
Length = 152
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 85 WRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYLITPSEKSVML 261
+R++IV M +VS C I+ I + +D+ + E T+ IY TP+EK +L
Sbjct: 9 FRIIIVLLSFMCLVSVCSNYIIINFTFICMKDDLSQTTEVNGTLKSIYDYTPTEKKYIL 67
>AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical
protein Y4C6B.4a protein.
Length = 458
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 85 WRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDGIYLITPSEKSVML 261
+R++IV M +VS C I+ I + +D+ + E T+ IY TP+EK +L
Sbjct: 9 FRIIIVLLSFMCLVSVCSNYIIINFTFICMKDDLSQTTEVNGTLKSIYDYTPTEKKYIL 67
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 58 KGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDG 222
KGKE ARI VD+ + SA +G+ VE+ H++ +C DG
Sbjct: 223 KGKEEARINRAAAKVDKRKAALESARASKRARKEQGV--VEENHQENCEVCNQDG 275
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 58 KGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDG 222
KGKE ARI VD+ + SA +G+ VE+ H++ +C DG
Sbjct: 223 KGKEEARINRAAAKVDKRKAALESARASKRARKEQGV--VEENHQENCEVCNQDG 275
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 58 KGKESARIEWRVLIVDQLSMRMVSACCKMHDISAEGITLVEDIHKKREPLCTMDG 222
KGKE ARI VD+ + SA +G+ VE+ H++ +C DG
Sbjct: 223 KGKEEARINRAAAKVDKRKAALESARASKRARKEQGV--VEENHQENCEVCNQDG 275
>U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical
protein F19F10.11b protein.
Length = 868
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +3
Query: 303 AAHVFFTEACPDILFNELSRSQIAKYIKTLKEINIAFI---PYEQQVFSLDSPETFQCMY 473
+++ + TE P + N++ S I IK + P+ Q E+ +Y
Sbjct: 136 SSNSWLTEYRPSVPGNQIENSNIENLIKKVAPFYSRTTHESPHSSQTVEDFRSESLDLLY 195
Query: 474 NPALAQTRNANMNVLLNKSRPSVPRSANILP 566
P +Q A + + +N+S P + +LP
Sbjct: 196 -PMRSQEERAKITMQINRSSPILDNEQQVLP 225
>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
protein F19F10.11a protein.
Length = 1121
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +3
Query: 303 AAHVFFTEACPDILFNELSRSQIAKYIKTLKEINIAFI---PYEQQVFSLDSPETFQCMY 473
+++ + TE P + N++ S I IK + P+ Q E+ +Y
Sbjct: 136 SSNSWLTEYRPSVPGNQIENSNIENLIKKVAPFYSRTTHESPHSSQTVEDFRSESLDLLY 195
Query: 474 NPALAQTRNANMNVLLNKSRPSVPRSANILP 566
P +Q A + + +N+S P + +LP
Sbjct: 196 -PMRSQEERAKITMQINRSSPILDNEQQVLP 225
>U97012-9|AAK39142.2| 995|Caenorhabditis elegans Hypothetical
protein C04E6.11 protein.
Length = 995
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 617 GLVELTQHCVPNHCGIERKDIRRAWHRGSRFVQQ 516
G V L +HC+ + R +++ HRGS F+ Q
Sbjct: 797 GTVALLRHCLQQNTDEARMNLQFVLHRGSTFLSQ 830
>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
protein Y48G8AL.1 protein.
Length = 1019
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 122 WSQ--LAAKCMIYLLKELPWLRTFTRNVNLYALWMVFT 229
WS+ +C+ LL LPWL FT NVN+ + V T
Sbjct: 474 WSENLKGIECLRVLLM-LPWLPIFTENVNVQTIKNVHT 510
>AF039712-2|AAK21401.1| 401|Caenorhabditis elegans Hypothetical
protein F54D7.3 protein.
Length = 401
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 369 IAKYIKTLKEINIAFIPYEQQVFSLDSPETFQCMYNPALAQTRNANMNVLLNKSRPSV-- 542
I K+I +N A PY FS D + Q ++ + A + +++ N SR V
Sbjct: 288 IRKFIYAFAVLNSAISPYLYGYFSFDIRKELQLLFACSKATAADRHLSCSANVSRNQVTE 347
Query: 543 ---PRSANILPFD 572
RSA+ FD
Sbjct: 348 RMRKRSASACNFD 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,752,402
Number of Sequences: 27780
Number of extensions: 341776
Number of successful extensions: 915
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -