Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0534
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    71   1e-13
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    40   5e-04
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   2.2  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   2.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.9  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.7  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   8.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.9  

>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 36/87 (41%), Positives = 51/87 (58%)
 Frame = +2

Query: 254 IHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDET 433
           ++T RL++     PRW   LI  A+ CY  E S V+   R +TL T+NLTF   + VDET
Sbjct: 49  LYTERLITCHQALPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDET 108

Query: 434 VRYTPHPSDSSKTLLKQEAVVTVQGCL 514
           V Y+PHP +   T+ +QEA +    C+
Sbjct: 109 VTYSPHP-ELEATVFQQEARIEALACM 134



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +3

Query: 114 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD 248
           MKI+ S H F +P+E V+ A W+KYPN     VI  D ++RKV+D
Sbjct: 1   MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLD 45


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/75 (29%), Positives = 39/75 (52%)
 Frame = +2

Query: 254 IHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDET 433
           ++T RL+  +   PRWA  L+   K  Y  E S ++P ++++  +T NL     + V E 
Sbjct: 50  LYTERLLVKQGRLPRWASDLLNVNK-SYILERSVIDPSKQELKSETFNLDHVKILRVIEY 108

Query: 434 VRYTPHPSDSSKTLL 478
            R+     + SKT++
Sbjct: 109 SRFIQSSENCSKTIV 123



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 120 IWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD 248
           I T +   N  W TV+ A   +YPNP +  V+  DV+ER V D
Sbjct: 4   ICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDD 46


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 436 TVYSTSFRFLKNITKTRSCSHCT--RLPLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFD 609
           T+   S   ++N+  +++ S  T  R P+ +   D+ T   S+N  K   A +WVI +  
Sbjct: 133 TLLIESLETVRNLRSSQANSQSTQPRDPIPTENFDVRTPSYSINYKKPVPAGDWVIVRVK 192

Query: 610 TEIKELASSACKSTGELL 663
            ++  L +S  +   E L
Sbjct: 193 DDVARLYNSKSQLLAEAL 210


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 225 VVERKVVDGVFILID*SVPNGFFHDGPR 308
           V+E KV++G+   ID  + NG  H+G R
Sbjct: 713 VLEVKVIEGLGATIDVILSNGVLHEGDR 740


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 209 RHRDRCCGKKS-CRWCIHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTL 385
           + R +C  +K  C  CI + R       FPR +     + +I  +S +SE  P    +  
Sbjct: 51  KRRIKCDERKPICYNCIKSKRQCEGYTHFPRPSGTFTASRRIPVSSLLSE--PAPHGLAG 108

Query: 386 KTTNLTFCHYI 418
           + T+ TF +YI
Sbjct: 109 QPTHPTFLYYI 119


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 431 FHQQQCN-DRMLGLLFLKSSVAVLGLLLISH*HN 333
           FH  Q N D++L + FL   V ++G+L  +H HN
Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 538 LTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTGELLSQTK 675
           L N++ +++    +  +WV  K D E+KE+ +     T   L  T+
Sbjct: 641 LVNRLDVDSFLHPKTPKWVFNKQDQEVKEIKALTSTVTDSTLVDTQ 686


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 346 DIRS--KPNTATDDFKNNKPN 402
           D+RS      ATDDF +NKPN
Sbjct: 209 DVRSLVAGTPATDDFSHNKPN 229


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 537 KVFHVTTERQPCTVTTASCFSNVFEESEG 451
           K F + +++ P    T    SN+ EESEG
Sbjct: 888 KAFGIDSKKSPTPEPTEMAESNISEESEG 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,758
Number of Sequences: 5004
Number of extensions: 66633
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)