BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0534 (759 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC36.10 |||mitochondrial intermembrane space protein sorting p... 71 1e-13 SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 40 5e-04 SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.2 SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 2.2 SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 27 2.2 SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 2.9 SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 6.7 SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 8.9 SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 8.9 >SPBC36.10 |||mitochondrial intermembrane space protein sorting protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 184 Score = 71.3 bits (167), Expect = 1e-13 Identities = 36/87 (41%), Positives = 51/87 (58%) Frame = +2 Query: 254 IHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDET 433 ++T RL++ PRW LI A+ CY E S V+ R +TL T+NLTF + VDET Sbjct: 49 LYTERLITCHQALPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDET 108 Query: 434 VRYTPHPSDSSKTLLKQEAVVTVQGCL 514 V Y+PHP + T+ +QEA + C+ Sbjct: 109 VTYSPHP-ELEATVFQQEARIEALACM 134 Score = 50.0 bits (114), Expect = 4e-07 Identities = 22/45 (48%), Positives = 30/45 (66%) Frame = +3 Query: 114 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD 248 MKI+ S H F +P+E V+ A W+KYPN VI D ++RKV+D Sbjct: 1 MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLD 45 >SPAP8A3.10 |||mitochondrial intermembrane space protein sorting protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 171 Score = 39.5 bits (88), Expect = 5e-04 Identities = 22/75 (29%), Positives = 39/75 (52%) Frame = +2 Query: 254 IHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDET 433 ++T RL+ + PRWA L+ K Y E S ++P ++++ +T NL + V E Sbjct: 50 LYTERLLVKQGRLPRWASDLLNVNK-SYILERSVIDPSKQELKSETFNLDHVKILRVIEY 108 Query: 434 VRYTPHPSDSSKTLL 478 R+ + SKT++ Sbjct: 109 SRFIQSSENCSKTIV 123 Score = 37.9 bits (84), Expect = 0.002 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = +3 Query: 120 IWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD 248 I T + N W TV+ A +YPNP + V+ DV+ER V D Sbjct: 4 ICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDD 46 >SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 214 Score = 27.5 bits (58), Expect = 2.2 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Frame = +1 Query: 436 TVYSTSFRFLKNITKTRSCSHCT--RLPLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFD 609 T+ S ++N+ +++ S T R P+ + D+ T S+N K A +WVI + Sbjct: 133 TLLIESLETVRNLRSSQANSQSTQPRDPIPTENFDVRTPSYSINYKKPVPAGDWVIVRVK 192 Query: 610 TEIKELASSACKSTGELL 663 ++ L +S + E L Sbjct: 193 DDVARLYNSKSQLLAEAL 210 >SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1079 Score = 27.5 bits (58), Expect = 2.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 225 VVERKVVDGVFILID*SVPNGFFHDGPR 308 V+E KV++G+ ID + NG H+G R Sbjct: 713 VLEVKVIEGLGATIDVILSNGVLHEGDR 740 >SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster type|Schizosaccharomyces pombe|chr 2|||Manual Length = 419 Score = 27.5 bits (58), Expect = 2.2 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = +2 Query: 209 RHRDRCCGKKS-CRWCIHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTL 385 + R +C +K C CI + R FPR + + +I +S +SE P + Sbjct: 51 KRRIKCDERKPICYNCIKSKRQCEGYTHFPRPSGTFTASRRIPVSSLLSE--PAPHGLAG 108 Query: 386 KTTNLTFCHYI 418 + T+ TF +YI Sbjct: 109 QPTHPTFLYYI 119 >SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 732 Score = 27.1 bits (57), Expect = 2.9 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -2 Query: 431 FHQQQCN-DRMLGLLFLKSSVAVLGLLLISH*HN 333 FH Q N D++L + FL V ++G+L +H HN Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476 >SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1458 Score = 25.8 bits (54), Expect = 6.7 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = +1 Query: 538 LTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTGELLSQTK 675 L N++ +++ + +WV K D E+KE+ + T L T+ Sbjct: 641 LVNRLDVDSFLHPKTPKWVFNKQDQEVKEIKALTSTVTDSTLVDTQ 686 >SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 551 Score = 25.4 bits (53), Expect = 8.9 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%) Frame = +1 Query: 346 DIRS--KPNTATDDFKNNKPN 402 D+RS ATDDF +NKPN Sbjct: 209 DVRSLVAGTPATDDFSHNKPN 229 >SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pombe|chr 1|||Manual Length = 1325 Score = 25.4 bits (53), Expect = 8.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -1 Query: 537 KVFHVTTERQPCTVTTASCFSNVFEESEG 451 K F + +++ P T SN+ EESEG Sbjct: 888 KAFGIDSKKSPTPEPTEMAESNISEESEG 916 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,129,758 Number of Sequences: 5004 Number of extensions: 66633 Number of successful extensions: 188 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 188 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 363302114 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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