Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0534
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)              28   7.2  
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                28   9.5  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2)                      28   9.5  

>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1528

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/83 (20%), Positives = 35/83 (42%)
 Frame = +1

Query: 439 VYSTSFRFLKNITKTRSCSHCTRLPLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEI 618
           V   S +FL  ++K +     +  P + Y+ D + + +      G+     +  K     
Sbjct: 572 VKDVSKQFLVAVSKKQQRKRRSTEPFTDYIRDEVRSHVRRKRFVGKYLCTKIAKKICGGS 631

Query: 619 KELASSACKSTGELLSQTKKSID 687
           K+   ++CK T ++     KS+D
Sbjct: 632 KKFCKASCKMTSQITKGVCKSLD 654


>SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)
          Length = 1097

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
 Frame = +2

Query: 212 HRDRCCGKKSCRWCIHTHRLVSSKWFFPRWAQALIGTAKICY-----ASEISEVNPIQRQ 376
           H D      SCR C H   ++ +  + PR    +I T            + S   P    
Sbjct: 390 HTDLVMQTLSCRPC-HADLVIQTLSYRPRHTDLVIQTLSYRLRHTDLVMQTSSYRPCHTD 448

Query: 377 MTLKTTNLTFCHYIAVDETVRYTP-HPSDSSKTL 475
           + ++T++   CH   V +T+ Y P H +   +TL
Sbjct: 449 LVIQTSSCRPCHTDLVIQTLSYRPCHTNFVMQTL 482


>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 129 MSKSSCFFLISNANCSIEIRISKTKNY 49
           M+KSS  F I+ +NC +E+R+ K   +
Sbjct: 1   MAKSSRTFTIAISNCYVEVRLRKLNGF 27


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
 Frame = +2

Query: 332 CYASEISEVNP-IQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVTVQG 508
           C AS +    P I  + +   +  TFCHY     T   T  P  +S+T+ K   +     
Sbjct: 339 CAASPVPPTPPAISSKRSFSPSPSTFCHYSTEKITSSRTFVPVTNSQTIQKNSFLTDNSS 398

Query: 509 CLSVVTWKTF*PTKFL*MLAKEGKL*NGL*GSSTLKLRSLQVQPVK---VQVNYY 664
           C      +T      L     +         SS   + SLQ+ PV+   V+V  Y
Sbjct: 399 CNDTTRSETKVLVSSLESTLTKNTFSKPAPSSSKEYVPSLQIPPVQANTVEVRVY 453


>SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2)
          Length = 544

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 281 WN*LIYEYEYTIYNFSFHNI-CPYDGWIHRIRIFSPCCLSNCFPWMV 144
           W  +IY   Y +++ + H++ C      + +   SP C++ C  W V
Sbjct: 290 WRVIIYYVHYGMHSMACHHLLCALRDAFNGVST-SPMCITGCIQWRV 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,854,367
Number of Sequences: 59808
Number of extensions: 475910
Number of successful extensions: 1324
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)