Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0534
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    71   1e-12
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    44   9e-05
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    29   3.6  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   4.7  
Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = +3

Query: 114 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDG 251
           M+IW+SEH F+H WETVAQAA+RKYPNP+N ++ G DVV++ +  G
Sbjct: 1   MRIWSSEHIFDHEWETVAQAAFRKYPNPLNRSITGIDVVKQTLEAG 46



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 30/83 (36%), Positives = 50/83 (60%)
 Frame = +2

Query: 254 IHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDET 433
           I T R++ S +  P WA  L G +   Y+ E + ++P +++ +L T NL    ++ VDE 
Sbjct: 48  ILTERIIQSHFSIPSWATKLTGFSGTQYSHEYTVIDPTRKEFSLTTRNLNGSSFLRVDEK 107

Query: 434 VRYTPHPSDSSKTLLKQEAVVTV 502
           + YTP   D +KT+LKQ+ +VT+
Sbjct: 108 LTYTPAHEDPNKTILKQDVIVTI 130



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = +1

Query: 466 KNITKTRSCSHCTRLPLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACK 645
           K I K       T    + Y E    +  S NA KGRQ +EWVI     E + +++    
Sbjct: 119 KTILKQDVIVTITLPAFADYCEKTFLSIYSQNANKGRQGVEWVIDHLKKEYEAISTKVSS 178

Query: 646 STGELLSQTKKSIDDITTSA 705
              E+  +  +S    ++S+
Sbjct: 179 EVHEMSEKVLRSFGTTSSSS 198


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 114 MKIWTSEHT-FNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVFI 260
           MK+W S +T F + ++ VA A W +YPN     +I  DV+ER++ D   +
Sbjct: 1   MKLWDSPNTSFPYSFDEVASAFWDRYPNSHAKHIISEDVLERQITDNTIV 50


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 317 GTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVR 439
           GT K    +E+ E+NP + + T   +NLTF +  +V   +R
Sbjct: 66  GTPKKLTRAEVQEINPAKFEKTEDMSNLTFLNEASVLHNLR 106


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 659 YYHKQRSQLMTSQHQQEAQWMISHLKAKST 748
           YYH Q+ QL    HQQ+ Q +    + +S+
Sbjct: 177 YYHNQQKQLQQQHHQQQQQQLAFRPRHRSS 206


>Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical
           protein R03G8.4 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 522 LHGRPFNQQNFSKCWQRKASYRMGY 596
           ++G+PF+ + F +CW  +  Y   Y
Sbjct: 465 INGKPFDIEEFGRCWTHQTGYPTVY 489


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 185 FSPCCLSNCFPWMVECVF*CP 123
           F+ C L +C P+M ECV  CP
Sbjct: 63  FNECLLVHCLPYMEECV--CP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,288
Number of Sequences: 27780
Number of extensions: 368412
Number of successful extensions: 1019
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)