Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0534
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   4.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   4.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   4.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/41 (21%), Positives = 16/41 (39%)
 Frame = +3

Query: 141 FNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVFIL 263
           F+  W       W +Y    N    GTD   R ++   +++
Sbjct: 178 FSLGWTIAPMFGWNRYVPEGNMTACGTDYFNRGLLSASYLV 218


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/41 (21%), Positives = 16/41 (39%)
 Frame = +3

Query: 141 FNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVFIL 263
           F+  W       W +Y    N    GTD   R ++   +++
Sbjct: 54  FSLGWTIAPMFGWNRYVPEGNMTACGTDYFNRGLLSASYLV 94


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 281 KWFFPRWAQAL 313
           K+FFP+W Q L
Sbjct: 648 KFFFPKWLQVL 658


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 71  GSLRLKIIFTYHITDTTP 18
           G L    +FTY+IT++TP
Sbjct: 202 GELFDATVFTYNITNSTP 219


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 71  GSLRLKIIFTYHITDTTP 18
           G L    +FTY+IT++TP
Sbjct: 217 GELFDATVFTYNITNSTP 234


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 71  GSLRLKIIFTYHITDTTP 18
           G L    +FTY+IT++TP
Sbjct: 105 GELFDATVFTYNITNSTP 122


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 626 LQVQPVKVQVNYYHKQRSQL 685
           +Q+ P+ ++   YHKQ+ +L
Sbjct: 127 IQICPIYIESFSYHKQKLRL 146


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 GHQNTHSTIH 153
           GH+  HSTIH
Sbjct: 192 GHRQRHSTIH 201


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 556 EKFCWLKGLPCNY 518
           E  C +KG+PC++
Sbjct: 539 EHVCGVKGIPCSW 551


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,056
Number of Sequences: 438
Number of extensions: 4284
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)