BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0534 (759 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 23 3.1 AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 23 3.1 DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 23 4.1 DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid p... 23 4.1 AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatas... 23 4.1 AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase prec... 23 4.1 DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 9.5 DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 9.5 AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 9.5 >U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin protein. Length = 377 Score = 23.0 bits (47), Expect = 3.1 Identities = 9/41 (21%), Positives = 16/41 (39%) Frame = +3 Query: 141 FNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVFIL 263 F+ W W +Y N GTD R ++ +++ Sbjct: 178 FSLGWTIAPMFGWNRYVPEGNMTACGTDYFNRGLLSASYLV 218 >AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodopsin protein. Length = 154 Score = 23.0 bits (47), Expect = 3.1 Identities = 9/41 (21%), Positives = 16/41 (39%) Frame = +3 Query: 141 FNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVFIL 263 F+ W W +Y N GTD R ++ +++ Sbjct: 54 FSLGWTIAPMFGWNRYVPEGNMTACGTDYFNRGLLSASYLV 94 >DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. Length = 828 Score = 22.6 bits (46), Expect = 4.1 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = +2 Query: 281 KWFFPRWAQAL 313 K+FFP+W Q L Sbjct: 648 KFFFPKWLQVL 658 >DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid phosphatase protein. Length = 373 Score = 22.6 bits (46), Expect = 4.1 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -2 Query: 71 GSLRLKIIFTYHITDTTP 18 G L +FTY+IT++TP Sbjct: 202 GELFDATVFTYNITNSTP 219 >AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatase precursor protein. Length = 388 Score = 22.6 bits (46), Expect = 4.1 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -2 Query: 71 GSLRLKIIFTYHITDTTP 18 G L +FTY+IT++TP Sbjct: 217 GELFDATVFTYNITNSTP 234 >AF205594-1|AAQ13840.1| 156|Apis mellifera acid phosphatase precursor protein. Length = 156 Score = 22.6 bits (46), Expect = 4.1 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -2 Query: 71 GSLRLKIIFTYHITDTTP 18 G L +FTY+IT++TP Sbjct: 105 GELFDATVFTYNITNSTP 122 >DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 391 Score = 21.4 bits (43), Expect = 9.5 Identities = 7/20 (35%), Positives = 14/20 (70%) Frame = +2 Query: 626 LQVQPVKVQVNYYHKQRSQL 685 +Q+ P+ ++ YHKQ+ +L Sbjct: 127 IQICPIYIESFSYHKQKLRL 146 >DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride channel protein. Length = 445 Score = 21.4 bits (43), Expect = 9.5 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +1 Query: 124 GHQNTHSTIH 153 GH+ HSTIH Sbjct: 192 GHRQRHSTIH 201 >AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. Length = 898 Score = 21.4 bits (43), Expect = 9.5 Identities = 6/13 (46%), Positives = 10/13 (76%) Frame = -3 Query: 556 EKFCWLKGLPCNY 518 E C +KG+PC++ Sbjct: 539 EHVCGVKGIPCSW 551 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 206,056 Number of Sequences: 438 Number of extensions: 4284 Number of successful extensions: 13 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 13 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 23875740 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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