Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0533
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    25   0.81 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.6  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 156 KVSFHYILNSFSCGYIYSKCLCSTSELG 73
           K   +  +N   CGYI+S  L S S LG
Sbjct: 38  KTCLNLSINYCICGYIFSAILFSLSILG 65


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
 Frame = +1

Query: 49  AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLG------PKGTMKMLVSGAGDIKI 210
           A +++NP A    AAQ L +N+   + I       L        +  + + V GA     
Sbjct: 190 APTMINPSAICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAAQFLP 249

Query: 211 TKDGNVLLHEMQIQHLQPH 267
             D +VL+    +   +PH
Sbjct: 250 LMDFSVLVEACGVLQQEPH 268


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = -3

Query: 589 AWSSNGEYRINASIS*HICQAWVDLSFSEV 500
           +W+S         ++   C +W+DLS++ +
Sbjct: 377 SWNSISSLSHGGQLARFKCLSWLDLSYNRL 406


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,726
Number of Sequences: 336
Number of extensions: 3280
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)