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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0533
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...   100   2e-22
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    54   2e-08
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    51   1e-07
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    51   1e-07
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    48   2e-06
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    45   1e-05
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    41   2e-04
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    38   0.002
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    28   1.2  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   2.0  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    27   3.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   4.7  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   6.2  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   6.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   8.2  

>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score =  100 bits (240), Expect = 2e-22
 Identities = 50/68 (73%), Positives = 57/68 (83%)
 Frame = +1

Query: 52  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 231
           +SLLNPKAE  + AQAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2   LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61

Query: 232 LHEMQIQH 255
           L EMQIQ+
Sbjct: 62  LTEMQIQN 69



 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
 Frame = +3

Query: 255 PTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSL 434
           PTAS IA+                 LL+GELLKQA+++I EGLHP +I++GF++A+N++L
Sbjct: 70  PTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEAL 129

Query: 435 EVLESMKIPIEIARENLVDVARTSL--KLRSTQAWQMC*LML-ALMRYSPFELQANLLIC 605
             L+S K   E+ RE L++VA+TSL  K+ S     +   ++ A++     +   +L + 
Sbjct: 130 TFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMV 189

Query: 606 TWLKLWR*NTRRXXXXXXXXXXXMDHGARHPDMPKRV 716
             +K+     R            +DHGARHPDMPK+V
Sbjct: 190 EIMKM---QNRSASDTQLIRGLLLDHGARHPDMPKQV 223



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 24/47 (51%), Positives = 37/47 (78%)
 Frame = +2

Query: 512 TKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 652
           TK+   + + L  A VDA+LTIR P +P+DLHMVEIM+M++++A++T
Sbjct: 156 TKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASDT 202


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 21/49 (42%), Positives = 34/49 (69%)
 Frame = +1

Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
           NI AAK + DV++T LGP+  +KML+   G + +T DG+ +L E+++ H
Sbjct: 24  NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAH 72



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +3

Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEI-ARENLVDVART 503
           ++L GE+L  A   +   +HP ++   F  A   +L +++ + +P+ +     +  + RT
Sbjct: 97  IILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRT 156

Query: 504 SLKLRSTQAWQ--MC*LMLALMR 566
            +  +    W   MC L L  +R
Sbjct: 157 CIGTKLVARWSDLMCHLALRAVR 179


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 20/53 (37%), Positives = 38/53 (71%)
 Frame = +1

Query: 97  ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
           A+  +I A K + ++++T+LGP+G  K+L+S  G+I +T DG  +L +M+++H
Sbjct: 35  AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEH 87


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 20/49 (40%), Positives = 33/49 (67%)
 Frame = +1

Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
           NI AA+ + D ++T+LGPKG  KM+ +G G++ +T DG  +L  + + H
Sbjct: 24  NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLH 72


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = +1

Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
           N+ A   I +V+K++LGP G  KMLV   GD+ +T DG  +L  + ++H
Sbjct: 26  NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 16/63 (25%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
 Frame = +3

Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVL-ESMKIPIE-IARENLVDVAR 500
           V++  ELL++A+  +   +HP  I  G+ +A  ++++ + + +   ++ + +E+L++VA+
Sbjct: 99  VIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGKESLINVAK 158

Query: 501 TSL 509
           TS+
Sbjct: 159 TSM 161


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +1

Query: 100 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
           L  NI+A   +QD ++T LGP G  K++V   G++ I+ DG  ++  + I H
Sbjct: 26  LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVH 77


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
 Frame = +3

Query: 342 ELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI-----PIEIARENLVDVARTS 506
           ELL+QA+I ++  +HP++I +G+ IA   +++ L +  I     P +  R +L ++ART+
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKF-RSDLENIARTT 162

Query: 507 L 509
           L
Sbjct: 163 L 163



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 85  RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLLHEMQIQH 255
           R   A   +   A  + D++K+ LGPKG  K+L S + GDI +T DG  +L  + + +
Sbjct: 17  RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDN 74


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
 Frame = +3

Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM---KIPIEIARENLVDVA 497
           V+  GELL +A+  I  GL P  I +G+++A + ++EVLE +   KI    + + L+   
Sbjct: 104 VVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAI 163

Query: 498 RTSL 509
           RT +
Sbjct: 164 RTCI 167


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 363 IFISEGLHPRIITEGFDIARNKSLEVLESMKI 458
           +F+ E +    I EGF IAR K +E LE +K+
Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKV 468


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 650  TCTCKRSSNGSWCT 691
            TC  +R SNG WCT
Sbjct: 972  TCIIERDSNGRWCT 985


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 142 MKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 252
           +   LGPKG   ++    G  KITKDG  +   + ++
Sbjct: 58  VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLK 94


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/78 (20%), Positives = 31/78 (39%)
 Frame = -3

Query: 586 WSSNGEYRINASIS*HICQAWVDLSFSEVRATSTKFSRAISIGIFIDSKTSNDLLRAMSK 407
           W  N  Y     +S +  Q+W+      V   S   +  ++   F + +    L  A   
Sbjct: 224 WVFNKNYTQYIPVSLYDLQSWLGAPCIYVYDCSAAGNIIVNFNRFAEQRDKEALRIAKQN 283

Query: 406 PSVMILGCKPSLMNMSAC 353
           P+V+ +    S + ++AC
Sbjct: 284 PNVLAMPSHTSCIQLAAC 301


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 384 HPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTSLKLRSTQAW 533
           HP   +E F+   N   E +E++KIP  I      ++  ++ +    +AW
Sbjct: 321 HPSRSSEMFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQKYDIEAW 370


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 566 PHQRKHQLAHLPSLGGP*F 510
           PHQR H  A L   GGP F
Sbjct: 63  PHQRAHNAAALARSGGPGF 81


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 213 GDLYVPSTRNQHFHRAFRTKVSFHYILNSFSC 118
           G  +  S RN+ FHR F+      ++++ + C
Sbjct: 187 GYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,434
Number of Sequences: 5004
Number of extensions: 52333
Number of successful extensions: 151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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