BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0533 (717 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 100 2e-22 SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 54 2e-08 SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 51 1e-07 SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 51 1e-07 SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 48 2e-06 SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 45 1e-05 SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 41 2e-04 SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 38 0.002 SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 28 1.2 SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 2.0 SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 27 3.5 SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 4.7 SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 6.2 SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 6.2 SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 8.2 >SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit Cct6|Schizosaccharomyces pombe|chr 2|||Manual Length = 535 Score = 100 bits (240), Expect = 2e-22 Identities = 50/68 (73%), Positives = 57/68 (83%) Frame = +1 Query: 52 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 231 +SLLNPKAE + AQAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61 Query: 232 LHEMQIQH 255 L EMQIQ+ Sbjct: 62 LTEMQIQN 69 Score = 94.3 bits (224), Expect = 2e-20 Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 3/157 (1%) Frame = +3 Query: 255 PTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSL 434 PTAS IA+ LL+GELLKQA+++I EGLHP +I++GF++A+N++L Sbjct: 70 PTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEAL 129 Query: 435 EVLESMKIPIEIARENLVDVARTSL--KLRSTQAWQMC*LML-ALMRYSPFELQANLLIC 605 L+S K E+ RE L++VA+TSL K+ S + ++ A++ + +L + Sbjct: 130 TFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMV 189 Query: 606 TWLKLWR*NTRRXXXXXXXXXXXMDHGARHPDMPKRV 716 +K+ R +DHGARHPDMPK+V Sbjct: 190 EIMKM---QNRSASDTQLIRGLLLDHGARHPDMPKQV 223 Score = 57.6 bits (133), Expect = 2e-09 Identities = 24/47 (51%), Positives = 37/47 (78%) Frame = +2 Query: 512 TKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 652 TK+ + + L A VDA+LTIR P +P+DLHMVEIM+M++++A++T Sbjct: 156 TKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASDT 202 >SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit Cct3|Schizosaccharomyces pombe|chr 2|||Manual Length = 528 Score = 54.0 bits (124), Expect = 2e-08 Identities = 21/49 (42%), Positives = 34/49 (69%) Frame = +1 Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255 NI AAK + DV++T LGP+ +KML+ G + +T DG+ +L E+++ H Sbjct: 24 NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAH 72 Score = 36.7 bits (81), Expect = 0.003 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Frame = +3 Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEI-ARENLVDVART 503 ++L GE+L A + +HP ++ F A +L +++ + +P+ + + + RT Sbjct: 97 IILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRT 156 Query: 504 SLKLRSTQAWQ--MC*LMLALMR 566 + + W MC L L +R Sbjct: 157 CIGTKLVARWSDLMCHLALRAVR 179 >SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit Cct5|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 51.2 bits (117), Expect = 1e-07 Identities = 20/53 (37%), Positives = 38/53 (71%) Frame = +1 Query: 97 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255 A+ +I A K + ++++T+LGP+G K+L+S G+I +T DG +L +M+++H Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEH 87 >SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit Cct4|Schizosaccharomyces pombe|chr 2|||Manual Length = 527 Score = 51.2 bits (117), Expect = 1e-07 Identities = 20/49 (40%), Positives = 33/49 (67%) Frame = +1 Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255 NI AA+ + D ++T+LGPKG KM+ +G G++ +T DG +L + + H Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLH 72 >SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit Cct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 47.6 bits (108), Expect = 2e-06 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +1 Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255 N+ A I +V+K++LGP G KMLV GD+ +T DG +L + ++H Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74 Score = 36.3 bits (80), Expect = 0.004 Identities = 16/63 (25%), Positives = 41/63 (65%), Gaps = 2/63 (3%) Frame = +3 Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVL-ESMKIPIE-IARENLVDVAR 500 V++ ELL++A+ + +HP I G+ +A ++++ + + + ++ + +E+L++VA+ Sbjct: 99 VIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGKESLINVAK 158 Query: 501 TSL 509 TS+ Sbjct: 159 TSM 161 >SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit Cct7|Schizosaccharomyces pombe|chr 2|||Manual Length = 558 Score = 44.8 bits (101), Expect = 1e-05 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = +1 Query: 100 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255 L NI+A +QD ++T LGP G K++V G++ I+ DG ++ + I H Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVH 77 >SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit Cct2|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 40.7 bits (91), Expect = 2e-04 Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 5/61 (8%) Frame = +3 Query: 342 ELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI-----PIEIARENLVDVARTS 506 ELL+QA+I ++ +HP++I +G+ IA +++ L + I P + R +L ++ART+ Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKF-RSDLENIARTT 162 Query: 507 L 509 L Sbjct: 163 L 163 Score = 37.9 bits (84), Expect = 0.001 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = +1 Query: 85 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLLHEMQIQH 255 R A + A + D++K+ LGPKG K+L S + GDI +T DG +L + + + Sbjct: 17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDN 74 >SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit Cct8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 546 Score = 37.5 bits (83), Expect = 0.002 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Frame = +3 Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM---KIPIEIARENLVDVA 497 V+ GELL +A+ I GL P I +G+++A + ++EVLE + KI + + L+ Sbjct: 104 VVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAI 163 Query: 498 RTSL 509 RT + Sbjct: 164 RTCI 167 >SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 509 Score = 28.3 bits (60), Expect = 1.2 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +3 Query: 363 IFISEGLHPRIITEGFDIARNKSLEVLESMKI 458 +F+ E + I EGF IAR K +E LE +K+ Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKV 468 >SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|||Manual Length = 997 Score = 27.5 bits (58), Expect = 2.0 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 Query: 650 TCTCKRSSNGSWCT 691 TC +R SNG WCT Sbjct: 972 TCIIERDSNGRWCT 985 >SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60|Schizosaccharomyces pombe|chr 1|||Manual Length = 582 Score = 26.6 bits (56), Expect = 3.5 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +1 Query: 142 MKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 252 + LGPKG ++ G KITKDG + + ++ Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLK 94 >SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1313 Score = 26.2 bits (55), Expect = 4.7 Identities = 16/78 (20%), Positives = 31/78 (39%) Frame = -3 Query: 586 WSSNGEYRINASIS*HICQAWVDLSFSEVRATSTKFSRAISIGIFIDSKTSNDLLRAMSK 407 W N Y +S + Q+W+ V S + ++ F + + L A Sbjct: 224 WVFNKNYTQYIPVSLYDLQSWLGAPCIYVYDCSAAGNIIVNFNRFAEQRDKEALRIAKQN 283 Query: 406 PSVMILGCKPSLMNMSAC 353 P+V+ + S + ++AC Sbjct: 284 PNVLAMPSHTSCIQLAAC 301 >SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual Length = 454 Score = 25.8 bits (54), Expect = 6.2 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = +3 Query: 384 HPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTSLKLRSTQAW 533 HP +E F+ N E +E++KIP I ++ ++ + +AW Sbjct: 321 HPSRSSEMFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQKYDIEAW 370 >SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |Schizosaccharomyces pombe|chr 3|||Manual Length = 690 Score = 25.8 bits (54), Expect = 6.2 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = -2 Query: 566 PHQRKHQLAHLPSLGGP*F 510 PHQR H A L GGP F Sbjct: 63 PHQRAHNAAALARSGGPGF 81 >SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 764 Score = 25.4 bits (53), Expect = 8.2 Identities = 9/32 (28%), Positives = 17/32 (53%) Frame = -1 Query: 213 GDLYVPSTRNQHFHRAFRTKVSFHYILNSFSC 118 G + S RN+ FHR F+ ++++ + C Sbjct: 187 GYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,790,434 Number of Sequences: 5004 Number of extensions: 52333 Number of successful extensions: 151 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 151 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 335201398 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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