Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0533
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 100 2e-22
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 54 2e-08
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 51 1e-07
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 51 1e-07
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 48 2e-06
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 45 1e-05
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 41 2e-04
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 38 0.002
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 28 1.2
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 2.0
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 27 3.5
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 4.7
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 6.2
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 6.2
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 8.2
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 100 bits (240), Expect = 2e-22
Identities = 50/68 (73%), Positives = 57/68 (83%)
Frame = +1
Query: 52 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 231
+SLLNPKAE + AQAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61
Query: 232 LHEMQIQH 255
L EMQIQ+
Sbjct: 62 LTEMQIQN 69
Score = 94.3 bits (224), Expect = 2e-20
Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Frame = +3
Query: 255 PTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSL 434
PTAS IA+ LL+GELLKQA+++I EGLHP +I++GF++A+N++L
Sbjct: 70 PTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEAL 129
Query: 435 EVLESMKIPIEIARENLVDVARTSL--KLRSTQAWQMC*LML-ALMRYSPFELQANLLIC 605
L+S K E+ RE L++VA+TSL K+ S + ++ A++ + +L +
Sbjct: 130 TFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMV 189
Query: 606 TWLKLWR*NTRRXXXXXXXXXXXMDHGARHPDMPKRV 716
+K+ R +DHGARHPDMPK+V
Sbjct: 190 EIMKM---QNRSASDTQLIRGLLLDHGARHPDMPKQV 223
Score = 57.6 bits (133), Expect = 2e-09
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = +2
Query: 512 TKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 652
TK+ + + L A VDA+LTIR P +P+DLHMVEIM+M++++A++T
Sbjct: 156 TKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASDT 202
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +1
Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
NI AAK + DV++T LGP+ +KML+ G + +T DG+ +L E+++ H
Sbjct: 24 NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAH 72
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEI-ARENLVDVART 503
++L GE+L A + +HP ++ F A +L +++ + +P+ + + + RT
Sbjct: 97 IILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRT 156
Query: 504 SLKLRSTQAWQ--MC*LMLALMR 566
+ + W MC L L +R
Sbjct: 157 CIGTKLVARWSDLMCHLALRAVR 179
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 51.2 bits (117), Expect = 1e-07
Identities = 20/53 (37%), Positives = 38/53 (71%)
Frame = +1
Query: 97 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
A+ +I A K + ++++T+LGP+G K+L+S G+I +T DG +L +M+++H
Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEH 87
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 51.2 bits (117), Expect = 1e-07
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = +1
Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
NI AA+ + D ++T+LGPKG KM+ +G G++ +T DG +L + + H
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLH 72
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +1
Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
N+ A I +V+K++LGP G KMLV GD+ +T DG +L + ++H
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/63 (25%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVL-ESMKIPIE-IARENLVDVAR 500
V++ ELL++A+ + +HP I G+ +A ++++ + + + ++ + +E+L++VA+
Sbjct: 99 VIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGKESLINVAK 158
Query: 501 TSL 509
TS+
Sbjct: 159 TSM 161
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +1
Query: 100 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
L NI+A +QD ++T LGP G K++V G++ I+ DG ++ + I H
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVH 77
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Frame = +3
Query: 342 ELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI-----PIEIARENLVDVARTS 506
ELL+QA+I ++ +HP++I +G+ IA +++ L + I P + R +L ++ART+
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKF-RSDLENIARTT 162
Query: 507 L 509
L
Sbjct: 163 L 163
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLLHEMQIQH 255
R A + A + D++K+ LGPKG K+L S + GDI +T DG +L + + +
Sbjct: 17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDN 74
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM---KIPIEIARENLVDVA 497
V+ GELL +A+ I GL P I +G+++A + ++EVLE + KI + + L+
Sbjct: 104 VVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAI 163
Query: 498 RTSL 509
RT +
Sbjct: 164 RTCI 167
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 363 IFISEGLHPRIITEGFDIARNKSLEVLESMKI 458
+F+ E + I EGF IAR K +E LE +K+
Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKV 468
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 650 TCTCKRSSNGSWCT 691
TC +R SNG WCT
Sbjct: 972 TCIIERDSNGRWCT 985
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 142 MKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 252
+ LGPKG ++ G KITKDG + + ++
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLK 94
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/78 (20%), Positives = 31/78 (39%)
Frame = -3
Query: 586 WSSNGEYRINASIS*HICQAWVDLSFSEVRATSTKFSRAISIGIFIDSKTSNDLLRAMSK 407
W N Y +S + Q+W+ V S + ++ F + + L A
Sbjct: 224 WVFNKNYTQYIPVSLYDLQSWLGAPCIYVYDCSAAGNIIVNFNRFAEQRDKEALRIAKQN 283
Query: 406 PSVMILGCKPSLMNMSAC 353
P+V+ + S + ++AC
Sbjct: 284 PNVLAMPSHTSCIQLAAC 301
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 384 HPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTSLKLRSTQAW 533
HP +E F+ N E +E++KIP I ++ ++ + +AW
Sbjct: 321 HPSRSSEMFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQKYDIEAW 370
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 566 PHQRKHQLAHLPSLGGP*F 510
PHQR H A L GGP F
Sbjct: 63 PHQRAHNAAALARSGGPGF 81
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -1
Query: 213 GDLYVPSTRNQHFHRAFRTKVSFHYILNSFSC 118
G + S RN+ FHR F+ ++++ + C
Sbjct: 187 GYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,434
Number of Sequences: 5004
Number of extensions: 52333
Number of successful extensions: 151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -