Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0533
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               99   4e-21
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  52   5e-07
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              50   2e-06
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              47   1e-05
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   45   5e-05
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                35   0.076
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.076
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      33   0.23 
SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)                   31   1.2  
SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)              29   5.0  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     29   5.0  
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               28   6.6  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 45/88 (51%), Positives = 65/88 (73%)
 Frame = +3

Query: 255 PTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSL 434
           PTASLIAR                V++IGELLKQAD+++SEGLHPR++TEGF++A+ K+L
Sbjct: 174 PTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKAL 233

Query: 435 EVLESMKIPIEIARENLVDVARTSLKLR 518
           EVLE +K+  E+ R+ L++VA+TSL+ +
Sbjct: 234 EVLEEVKVSREMDRDTLINVAKTSLRTK 261



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 36/52 (69%), Positives = 44/52 (84%)
 Frame = +1

Query: 43  MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAG 198
           MAAI  LNPKAE AR+A AL++NI+AA+G+QDV+KTNLGPKGTMK+L    G
Sbjct: 1   MAAIKSLNPKAEVARSAAALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52



 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 31/48 (64%), Positives = 40/48 (83%)
 Frame = +2

Query: 509 KTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 652
           +TKV   LAD+LT+  VDAVLTIR P KP+DLHMVE+MEM+HKT +++
Sbjct: 259 RTKVRTELADLLTEVVVDAVLTIRKPKKPIDLHMVEVMEMRHKTDSDS 306


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 21/49 (42%), Positives = 34/49 (69%)
 Frame = +1

Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
           +I AA+ +  ++KT+LGPKG  KM+VS  G++ +T DG  +L  M++ H
Sbjct: 35  HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDH 83


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +1

Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 222
           NI+AAK + D ++T+LGPKG  KM+  G GD+ IT DG
Sbjct: 29  NITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDG 66


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = +1

Query: 52  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 231
           I LL    + ++    L  NI A + I D ++T LGP+G  K++V G G   I+ DG  +
Sbjct: 641 IILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI 700

Query: 232 LHEMQIQH 255
           ++ + I H
Sbjct: 701 INLLDIVH 708


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = +1

Query: 52  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GDIKITKDGN 225
           +S+LN  AE  RA  A   +   A  I D++K+ LGPKG  K+L S    G+I++T DG 
Sbjct: 6   VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65

Query: 226 VLLHEMQIQH 255
            +L  + I +
Sbjct: 66  TILKSIGIDN 75



 Score = 34.3 bits (75), Expect = 0.10
 Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
 Frame = +3

Query: 330 LLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI----PIEIARENLVDVA 497
           +L  ELLK+A+  +S  +HP+ I  G+  +   + + LE+  +      E  RE+L+++A
Sbjct: 101 VLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFREDLMNIA 160

Query: 498 RTSL 509
           RT+L
Sbjct: 161 RTTL 164


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 64  NPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEM 243
           N   E    A+A A  +     + D +   LGPKG   ++    G  KITKDG  +   +
Sbjct: 57  NSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAI 116

Query: 244 QIQ 252
           +++
Sbjct: 117 ELK 119


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 227 FCYMRCKSSTYSLTDCSSVNRSR*CHWRWYNIYC 328
           FC + C S++   T C+    +R CH  WY  YC
Sbjct: 706 FCDVNCNSNSSHFT-CNKTTGARVCHSNWYGTYC 738



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 227 FCYMRCKSSTYSLTDCSSVNRSR*CHWRWYNIYC 328
           +C + C S++ S   C+    +R CH  WY   C
Sbjct: 737 YCDVYCNSNSSSHFACNKTTGARVCHRDWYGSLC 770


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
 Frame = +3

Query: 330 LLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI----PIEIARENLVDVA 497
           +L  ELLK+A+  +S  +HP+ I  G+  +   + + LE+  +      E  R++L+++A
Sbjct: 19  VLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIA 78

Query: 498 RTSL 509
           RT+L
Sbjct: 79  RTTL 82


>SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)
          Length = 651

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 58  LLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLL 234
           +LN  A+F  + + +    S  +G   V +  LG   T  +  +GAG + + K G V+L
Sbjct: 64  VLNSHAQFCPSLKEMRGESSMIRGYSPVTQAFLGTLFTWAVTAAGAGLVFVFKSGQVML 122


>SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 581 TPGKPVDLHMVEIMEMKHKTATETCTCKRSSNGSWCTSPRYAKAC 715
           T G PV     EI++  H   T  C C  ++ GS   +PR+A  C
Sbjct: 261 TVGNPVTYR--EIVQTFHIRETGRCLCGGATKGSKLPAPRWAPKC 303


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 491 CCPYFTKTKVHPSLADVLTDACVDAVLTIRTPG---KPVDLHMVEIMEMKHKTATETCTC 661
           C P   K + HPS+ +     C+D      T G   +P   + +   +++    T  C+C
Sbjct: 758 CHPDTGKCECHPSITERQCSRCLDHYFNF-TSGVGCQPCGCNELYSRDLQCDNDTGVCSC 816

Query: 662 KRSSNGSWCT 691
           K    G+ CT
Sbjct: 817 KDGVGGAKCT 826


>SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)
          Length = 320

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 572 TIRTPGKPVDLHMVEIMEMKHKTATE--TCTCKRSSN 676
           T R  G P DLHM  ++   H+T T+     C RSS+
Sbjct: 180 TTRGDGMPSDLHMTWVLTGCHRTRTQQGVMGCHRSSD 216


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 605 HMVEIMEMKHKTATETCTCKRSSNGSWCTSPRYAK 709
           HM +  E+K++   E CT +   + SW + P +++
Sbjct: 273 HMTDADEIKNRRENEFCTPRLHQSFSWMSMPHFSR 307


>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 255 VLDLHLM*QNIAILGDLYVPSTRNQHFHRAF 163
           V DL  + +    LGD+Y+P  RN H  R F
Sbjct: 29  VEDLKQVFKKYGDLGDIYIPRDRNTHESRGF 59


>SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1328

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/46 (23%), Positives = 28/46 (60%)
 Frame = +1

Query: 226 VLLHEMQIQHLQPH*LLERQPLKMMPLEMVQHLLSSSLESYLNRPT 363
           VL++ +++Q   P   +++ P K  P++ V+H ++   ++++ R T
Sbjct: 36  VLIYTLEVQAKPPEKPVKKLPFKHTPVKDVKHKVTEKSKAHIKRVT 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,189,913
Number of Sequences: 59808
Number of extensions: 407069
Number of successful extensions: 1007
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)