BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0533 (717 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-21 SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 52 5e-07 SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 50 2e-06 SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 47 1e-05 SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 45 5e-05 SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 35 0.076 SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.076 SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 33 0.23 SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05) 31 1.2 SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2 SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8 SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4) 29 5.0 SB_24482| Best HMM Match : KID (HMM E-Value=0.045) 29 5.0 SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 28 6.6 >SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 762 Score = 98.7 bits (235), Expect = 4e-21 Identities = 45/88 (51%), Positives = 65/88 (73%) Frame = +3 Query: 255 PTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSL 434 PTASLIAR V++IGELLKQAD+++SEGLHPR++TEGF++A+ K+L Sbjct: 174 PTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKAL 233 Query: 435 EVLESMKIPIEIARENLVDVARTSLKLR 518 EVLE +K+ E+ R+ L++VA+TSL+ + Sbjct: 234 EVLEEVKVSREMDRDTLINVAKTSLRTK 261 Score = 76.2 bits (179), Expect = 3e-14 Identities = 36/52 (69%), Positives = 44/52 (84%) Frame = +1 Query: 43 MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAG 198 MAAI LNPKAE AR+A AL++NI+AA+G+QDV+KTNLGPKGTMK+L G Sbjct: 1 MAAIKSLNPKAEVARSAAALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52 Score = 71.3 bits (167), Expect = 7e-13 Identities = 31/48 (64%), Positives = 40/48 (83%) Frame = +2 Query: 509 KTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 652 +TKV LAD+LT+ VDAVLTIR P KP+DLHMVE+MEM+HKT +++ Sbjct: 259 RTKVRTELADLLTEVVVDAVLTIRKPKKPIDLHMVEVMEMRHKTDSDS 306 >SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) Length = 505 Score = 52.0 bits (119), Expect = 5e-07 Identities = 21/49 (42%), Positives = 34/49 (69%) Frame = +1 Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255 +I AA+ + ++KT+LGPKG KM+VS G++ +T DG +L M++ H Sbjct: 35 HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDH 83 >SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) Length = 186 Score = 50.0 bits (114), Expect = 2e-06 Identities = 21/38 (55%), Positives = 28/38 (73%) Frame = +1 Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 222 NI+AAK + D ++T+LGPKG KM+ G GD+ IT DG Sbjct: 29 NITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDG 66 >SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) Length = 724 Score = 47.2 bits (107), Expect = 1e-05 Identities = 23/68 (33%), Positives = 37/68 (54%) Frame = +1 Query: 52 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 231 I LL + ++ L NI A + I D ++T LGP+G K++V G G I+ DG + Sbjct: 641 IILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI 700 Query: 232 LHEMQIQH 255 ++ + I H Sbjct: 701 INLLDIVH 708 >SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) Length = 531 Score = 45.2 bits (102), Expect = 5e-05 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +1 Query: 52 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GDIKITKDGN 225 +S+LN AE RA A + A I D++K+ LGPKG K+L S G+I++T DG Sbjct: 6 VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65 Query: 226 VLLHEMQIQH 255 +L + I + Sbjct: 66 TILKSIGIDN 75 Score = 34.3 bits (75), Expect = 0.10 Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Frame = +3 Query: 330 LLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI----PIEIARENLVDVA 497 +L ELLK+A+ +S +HP+ I G+ + + + LE+ + E RE+L+++A Sbjct: 101 VLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFREDLMNIA 160 Query: 498 RTSL 509 RT+L Sbjct: 161 RTTL 164 >SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) Length = 278 Score = 34.7 bits (76), Expect = 0.076 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = +1 Query: 64 NPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEM 243 N E A+A A + + D + LGPKG ++ G KITKDG + + Sbjct: 57 NSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAI 116 Query: 244 QIQ 252 +++ Sbjct: 117 ELK 119 >SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1050 Score = 34.7 bits (76), Expect = 0.076 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 227 FCYMRCKSSTYSLTDCSSVNRSR*CHWRWYNIYC 328 FC + C S++ T C+ +R CH WY YC Sbjct: 706 FCDVNCNSNSSHFT-CNKTTGARVCHSNWYGTYC 738 Score = 29.9 bits (64), Expect = 2.2 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +2 Query: 227 FCYMRCKSSTYSLTDCSSVNRSR*CHWRWYNIYC 328 +C + C S++ S C+ +R CH WY C Sbjct: 737 YCDVYCNSNSSSHFACNKTTGARVCHRDWYGSLC 770 >SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) Length = 144 Score = 33.1 bits (72), Expect = 0.23 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Frame = +3 Query: 330 LLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI----PIEIARENLVDVA 497 +L ELLK+A+ +S +HP+ I G+ + + + LE+ + E R++L+++A Sbjct: 19 VLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIA 78 Query: 498 RTSL 509 RT+L Sbjct: 79 RTTL 82 >SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05) Length = 651 Score = 30.7 bits (66), Expect = 1.2 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +1 Query: 58 LLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLL 234 +LN A+F + + + S +G V + LG T + +GAG + + K G V+L Sbjct: 64 VLNSHAQFCPSLKEMRGESSMIRGYSPVTQAFLGTLFTWAVTAAGAGLVFVFKSGQVML 122 >SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 675 Score = 29.9 bits (64), Expect = 2.2 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +2 Query: 581 TPGKPVDLHMVEIMEMKHKTATETCTCKRSSNGSWCTSPRYAKAC 715 T G PV EI++ H T C C ++ GS +PR+A C Sbjct: 261 TVGNPVTYR--EIVQTFHIRETGRCLCGGATKGSKLPAPRWAPKC 303 >SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1304 Score = 29.5 bits (63), Expect = 2.8 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = +2 Query: 491 CCPYFTKTKVHPSLADVLTDACVDAVLTIRTPG---KPVDLHMVEIMEMKHKTATETCTC 661 C P K + HPS+ + C+D T G +P + + +++ T C+C Sbjct: 758 CHPDTGKCECHPSITERQCSRCLDHYFNF-TSGVGCQPCGCNELYSRDLQCDNDTGVCSC 816 Query: 662 KRSSNGSWCT 691 K G+ CT Sbjct: 817 KDGVGGAKCT 826 >SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4) Length = 320 Score = 28.7 bits (61), Expect = 5.0 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +2 Query: 572 TIRTPGKPVDLHMVEIMEMKHKTATE--TCTCKRSSN 676 T R G P DLHM ++ H+T T+ C RSS+ Sbjct: 180 TTRGDGMPSDLHMTWVLTGCHRTRTQQGVMGCHRSSD 216 >SB_24482| Best HMM Match : KID (HMM E-Value=0.045) Length = 1714 Score = 28.7 bits (61), Expect = 5.0 Identities = 10/35 (28%), Positives = 20/35 (57%) Frame = +2 Query: 605 HMVEIMEMKHKTATETCTCKRSSNGSWCTSPRYAK 709 HM + E+K++ E CT + + SW + P +++ Sbjct: 273 HMTDADEIKNRRENEFCTPRLHQSFSWMSMPHFSR 307 >SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 204 Score = 28.3 bits (60), Expect = 6.6 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 255 VLDLHLM*QNIAILGDLYVPSTRNQHFHRAF 163 V DL + + LGD+Y+P RN H R F Sbjct: 29 VEDLKQVFKKYGDLGDIYIPRDRNTHESRGF 59 >SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0) Length = 1328 Score = 28.3 bits (60), Expect = 6.6 Identities = 11/46 (23%), Positives = 28/46 (60%) Frame = +1 Query: 226 VLLHEMQIQHLQPH*LLERQPLKMMPLEMVQHLLSSSLESYLNRPT 363 VL++ +++Q P +++ P K P++ V+H ++ ++++ R T Sbjct: 36 VLIYTLEVQAKPPEKPVKKLPFKHTPVKDVKHKVTEKSKAHIKRVT 81 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,189,913 Number of Sequences: 59808 Number of extensions: 407069 Number of successful extensions: 1007 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1005 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1901817086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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