Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0533
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 97 1e-20
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 97 1e-20
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 56 2e-08
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 52 3e-07
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 51 7e-07
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 51 7e-07
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 46 3e-05
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 45 6e-05
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 41 0.001
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 37 0.015
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 34 0.11
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.14
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.14
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 33 0.25
At1g45160.1 68414.m05177 protein kinase family protein contains ... 31 0.76
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.8
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 29 2.3
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 29 2.3
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 29 2.3
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 29 2.3
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 29 3.1
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 4.1
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 29 4.1
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = +1
Query: 49 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNV 228
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT+KMLV G+GDIK+TKDGN
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNT 61
Query: 229 LLHEMQIQH 255
LL EMQIQ+
Sbjct: 62 LLKEMQIQN 70
Score = 73.3 bits (172), Expect = 1e-13
Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
Frame = +3
Query: 255 PTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSL 434
PTA +IAR V+ IGEL+KQ++ I EG+HPR++ +GF+IA+ +L
Sbjct: 71 PTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATL 130
Query: 435 EVLESMKIPI----EIARENLVDVARTSL--KLRSTQAWQMC*LML-ALMRYSPFELQAN 593
+ L++ K P+ E+ +E L VART+L KL A Q+ +++ +++ E +
Sbjct: 131 QFLDNFKTPVVMGDEVDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPEEAID 190
Query: 594 LLICTWLKLWR*NTRRXXXXXXXXXXXMDHGARHPDMPKR 713
L + +++ + +DHG+RHPDM +R
Sbjct: 191 LFM---VEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRR 227
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +2
Query: 509 KTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 652
+TK++ LAD LTD V++VL IR P + +DL MVEIM M+HK +T
Sbjct: 160 RTKLYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVEIMHMRHKFDVDT 207
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = +1
Query: 49 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNV 228
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT+KMLV G+GDIK+TKDGN
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNT 61
Query: 229 LLHEMQIQH 255
LL EMQIQ+
Sbjct: 62 LLKEMQIQN 70
Score = 70.1 bits (164), Expect = 1e-12
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Frame = +3
Query: 255 PTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSL 434
PTA +IAR V+ IGEL+KQ++ I EG+HPR++ +GF+IA+ +L
Sbjct: 71 PTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATL 130
Query: 435 EVLESMKIPI----EIARENLVDVARTSL--KLRSTQAWQMC*LML--ALMRYSPFELQA 590
+ L++ K P+ E +E L VART+L KL A Q+ +++ L P E
Sbjct: 131 QFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPQE-PI 189
Query: 591 NLLICTWLKLWR*NTRRXXXXXXXXXXXMDHGARHPDMPKR 713
+L + +++ + +DHG+RHPDM +R
Sbjct: 190 DLFM---VEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRR 227
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/48 (54%), Positives = 35/48 (72%)
Frame = +2
Query: 509 KTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 652
+TK++ LAD LTD V++VL IR P +P+DL MVEIM M+HK +T
Sbjct: 160 RTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVEIMHMRHKFDVDT 207
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +1
Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
NI A+K + D+++T LGP+ +KML+ G I +T DGN +L E+ + H
Sbjct: 24 NIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILRELDVAH 72
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEI 470
++L GE+L A+ F+ + HP +I + A S+ VL+ + + I+I
Sbjct: 97 IVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKIAMSIDI 144
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +1
Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHLQPH*LLERQP 288
N+ A + + +++KT+LGP G KMLV GD+ IT DG +L ++++H L+E
Sbjct: 24 NVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAE 83
Query: 289 LK 294
L+
Sbjct: 84 LQ 85
Score = 34.7 bits (76), Expect = 0.062
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI-PIE-IARENLVDVAR 500
V++ ELLK+A+ + +HP I G+ +A +S + +E + +E + + L++ A+
Sbjct: 97 VIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAK 156
Query: 501 TSL 509
TS+
Sbjct: 157 TSM 159
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/52 (42%), Positives = 38/52 (73%)
Frame = +1
Query: 109 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHLQP 264
NI++A+ + D ++T+LGPKG KM+ + G++ IT DG +L++M++ LQP
Sbjct: 33 NINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEV--LQP 82
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIA-RENLVDVART 503
V++ G LLK+ ++ G+HP +I++ A K++++L +M +P+E+ R++LV A T
Sbjct: 106 VVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVPVELTDRDSLVKSAST 165
Query: 504 SL 509
SL
Sbjct: 166 SL 167
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +1
Query: 85 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
R A NI+A K + +++++LGPKG KML GDI IT DG +L +M + +
Sbjct: 25 RGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDN 81
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTS 506
V++ G LL+QA+ + G+HP I EG+++A ++E LE + E N + +T
Sbjct: 106 VVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTC 165
Query: 507 LKLRSTQAWQMC*LMLA 557
+ S++ C LA
Sbjct: 166 MTTLSSKIVNRCKRSLA 182
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = +1
Query: 94 QALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQH 255
+A+ NI A K + + +T+LGP G KM+++ + +T D +++E++IQH
Sbjct: 27 EAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEIQH 80
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 339 GELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM 452
GELL+ A+ I GLHP I G+ A +K++E+LE +
Sbjct: 109 GELLQNAEELIRMGLHPSEIISGYTKAVSKAVEILEQL 146
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 52 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 231
I LL + ++ L NI+A + DV++T LGP+G K++ G + I+ DG +
Sbjct: 9 IILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATI 68
Query: 232 LHEMQIQH 255
+ + I H
Sbjct: 69 MKLLDIVH 76
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIE 467
VLL E LK+A FI +G+H + + + A ++ ++ + + IE
Sbjct: 101 VLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAKVKELAVSIE 147
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTS 506
V++ G LL+QA+ + G+HP I EG+++A ++E LE + E N + +T
Sbjct: 30 VVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTC 89
Query: 507 LKLRSTQAWQMC*LMLA 557
+ S++ C LA
Sbjct: 90 MTTLSSKIVNRCKRSLA 106
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +3
Query: 327 VLLIGELLKQADIFISEGLHPRIITEGF----DIARNKSLEVLESMKIPIEIARENLVDV 494
V+L GELL++A+ ++ +HP I G+ + ARN L+ + K E R +L+ +
Sbjct: 98 VVLAGELLREAEKLVASKIHPMTIIAGYRMASECARNALLKRVIDNKDNAEKFRSDLLKI 157
Query: 495 ARTSL 509
A T+L
Sbjct: 158 AMTTL 162
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 605 ADQQVCLEFEW*VPHQRKHQLAHLPSLG 522
+ + +CL ++ PH +KH+ HLPS+G
Sbjct: 565 SSRPICLTCQYHCPHHKKHEKTHLPSIG 592
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 76 EFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 222
E +A A+ + + + D +K +GPKG ++ G K+TKDG
Sbjct: 35 EIKFGVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDG 83
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 97 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 252
A A + + + +K +GPKG ++ S G KITKDG + + Q
Sbjct: 42 ARAAMLQGVSEVAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQ 93
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 94 QALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 222
+A A+ + + + D +K +GPKG ++ G K+TKDG
Sbjct: 42 EARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKDG 84
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 221 AMFCYMRCKSSTYSLTDCSSVNRSR*CHW--RWYNIYCP 331
A FC+ SST S+T SS N R H+ W +CP
Sbjct: 521 AKFCHHATSSSTGSITSVSSTNTPRTSHFDSYWLERHCP 559
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 85 RAAQALAVNISAAKGIQDVMKTNLGPKGTMK 177
+ A NISA K + +++++LGPKG K
Sbjct: 25 KGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 130 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 252
+ D++ LGPKG +L S G +I DG + E++++
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELE 114
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 130 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 252
+ D++ LGPKG +L S G +I DG + E++++
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELE 114
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 130 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 252
+ D++ LGPKG +L S G +I DG + E++++
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELE 118
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 130 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 252
+ D++ LGPKG +L S G +I DG + E++++
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELE 118
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 115 SAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 252
+ A + ++ LGPKG +L + G +I DG +L E++++
Sbjct: 57 AGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELE 102
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 141 YILNSFSCGYIYSKCLCSTSELGF 70
+I+ S+ G +Y C C +S+LG+
Sbjct: 630 FIMKSYDGGEVYCSCYCVSSQLGY 653
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 439 TSNDLLRAMSKPSVMILGCKPSLMNMSACLSSSP 338
TS+ L+ + K + IL C P L N A SS+P
Sbjct: 628 TSSQLVEEIEKVNAAILDCNPKLQNGEAKDSSAP 661
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,715,976
Number of Sequences: 28952
Number of extensions: 279915
Number of successful extensions: 716
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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