Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0532
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  28   5.2  
SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6)              27   9.1  
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 429 TTTIQFL---VKVVTHQHHHFWT*ANFHHYSKRRG*PSTHYSTTT 554
           TTTI  +   V  +T QH+H +   N HH S +   P  +  TTT
Sbjct: 56  TTTITIIITTVNTITSQHNHHYRHHNHHHQSTQSSSPPVNTITTT 100


>SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 936

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 546 CCSGCLVTRASCCSDGNSLRSRSGGVDVSP 457
           CC G LV  ++ CS G S  S + G    P
Sbjct: 297 CCPGALVWNSTVCSSGQSSSSNNSGDQTKP 326


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 224 DTNFWGRLVACRNSTAMPGGAPPSMASRATLFGQRAFADRRSTMPTTLSQA 376
           DT+   R++A   +    G  PP  +S  TL        +++T+P TL+++
Sbjct: 400 DTSLRQRILAKDGANTRGGEPPPMPSSMTTLPSGNTIRIKKATLPKTLTES 450


>SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6)
          Length = 190

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 423 LATTTIQFLVKVVTHQHHHFWT*ANFHHYSKRR 521
           + T  +  ++ ++TH +HHF      HH+ +RR
Sbjct: 72  IITINLIIIIIIITHYYHHF-----HHHFHRRR 99


>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 267 LQCQAELPHQWHLELRCLVNELLQTEGLQCQQ 362
           LQCQ  L H+ HL+   + + LLQ E +  +Q
Sbjct: 142 LQCQGALCHRHHLDTDRVQDHLLQDEAMGHRQ 173


>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 352 CRPSVCKSSLTKQRSSRCH*WGSS 281
           CRP VC   L      +C+ WG S
Sbjct: 487 CRPGVCSVDLPSNDGRQCYPWGWS 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,707
Number of Sequences: 59808
Number of extensions: 315800
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)