BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0532 (614 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42 SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48) 28 5.2 SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6) 27 9.1 SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1 SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1 >SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 174 Score = 31.9 bits (69), Expect = 0.42 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = +3 Query: 429 TTTIQFL---VKVVTHQHHHFWT*ANFHHYSKRRG*PSTHYSTTT 554 TTTI + V +T QH+H + N HH S + P + TTT Sbjct: 56 TTTITIIITTVNTITSQHNHHYRHHNHHHQSTQSSSPPVNTITTT 100 >SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 936 Score = 30.3 bits (65), Expect = 1.3 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 546 CCSGCLVTRASCCSDGNSLRSRSGGVDVSP 457 CC G LV ++ CS G S S + G P Sbjct: 297 CCPGALVWNSTVCSSGQSSSSNNSGDQTKP 326 >SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48) Length = 776 Score = 28.3 bits (60), Expect = 5.2 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = +2 Query: 224 DTNFWGRLVACRNSTAMPGGAPPSMASRATLFGQRAFADRRSTMPTTLSQA 376 DT+ R++A + G PP +S TL +++T+P TL+++ Sbjct: 400 DTSLRQRILAKDGANTRGGEPPPMPSSMTTLPSGNTIRIKKATLPKTLTES 450 >SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6) Length = 190 Score = 27.5 bits (58), Expect = 9.1 Identities = 10/33 (30%), Positives = 19/33 (57%) Frame = +3 Query: 423 LATTTIQFLVKVVTHQHHHFWT*ANFHHYSKRR 521 + T + ++ ++TH +HHF HH+ +RR Sbjct: 72 IITINLIIIIIIITHYYHHF-----HHHFHRRR 99 >SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 179 Score = 27.5 bits (58), Expect = 9.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 267 LQCQAELPHQWHLELRCLVNELLQTEGLQCQQ 362 LQCQ L H+ HL+ + + LLQ E + +Q Sbjct: 142 LQCQGALCHRHHLDTDRVQDHLLQDEAMGHRQ 173 >SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1038 Score = 27.5 bits (58), Expect = 9.1 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = -2 Query: 352 CRPSVCKSSLTKQRSSRCH*WGSS 281 CRP VC L +C+ WG S Sbjct: 487 CRPGVCSVDLPSNDGRQCYPWGWS 510 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,431,707 Number of Sequences: 59808 Number of extensions: 315800 Number of successful extensions: 783 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 656 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 777 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1512078125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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