Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0532
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 567 FRARRWWCCSGCLVTRASCCSDGNSLRSRSGGV 469
           FRA++      C +  A+ CSDG S +SRS  V
Sbjct: 830 FRAKKTLLPVRCTLNNANTCSDGYSCQSRSKNV 862


>AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical
           protein T11F8.1 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 8   LVYYIEAEIFILA-EYTRL*TILILYKIVEQGLIIGYGK 121
           ++ + E E+F L+ E+ R    LI++ I+  GL+IG+ K
Sbjct: 23  VILFYEYEVFDLSDEWHRFNLYLIIFTIMVLGLLIGFAK 61


>Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 455 GGDTSTPPLLDLSEFPSLQQEARVTKHPLQHHHLRALNPMLV 580
           GG+ +TPP  + S FPS  +  ++ +  +     R+ +P ++
Sbjct: 504 GGNVTTPPTPNSSSFPSTPKTPQLVQQIISQSFARSQSPNVI 545


>Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 455 GGDTSTPPLLDLSEFPSLQQEARVTKHPLQHHHLRALNPMLV 580
           GG+ +TPP  + S FPS  +  ++ +  +     R+ +P ++
Sbjct: 504 GGNVTTPPTPNSSSFPSTPKTPQLVQQIISQSFARSQSPNVI 545


>U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical
           protein K06A1.6 protein.
          Length = 937

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 452 EGGDTSTPPLLDLSEFPSLQQEARVTKHPLQHHHLRALNPMLVW*SSRHRNK 607
           + G  S  PL  ++ + S+  +A V    LQ HH R+ NP ++  +SR +N+
Sbjct: 561 DDGMQSALPLTVMTNYFSIGADAHVA---LQFHHSRSANPQML--NSRLKNR 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,986
Number of Sequences: 27780
Number of extensions: 227495
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)