Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0532
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.78 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 426 ATTTIQFLVKVVTHQHHHFWT*ANFHHY 509
           ATTT   L+K  T Q HH     N HH+
Sbjct: 125 ATTTATGLIKQETLQRHHHL--QNHHHH 150



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = +2

Query: 458 GDTSTPPLLDLSEFPSLQQEARVTKHPLQHHHLRALNP 571
           GD S PP   L    S   +A+    P Q    +   P
Sbjct: 804 GDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQP 841


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 568 PYVGMVKQPTSEQIR 612
           PYV +++QP S+ +R
Sbjct: 45  PYVEIIEQPASKALR 59


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 568 PYVGMVKQPTSEQIR 612
           PYV +++QP S+ +R
Sbjct: 45  PYVEIIEQPASKALR 59


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 600 RCRLLHHTNIGFRARRW 550
           RC  +HH    F A+ W
Sbjct: 72  RCSDVHHFESSFNAQSW 88


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 473 PPLLDLSEFPSLQQEARVTKHPLQHHHLRALNP 571
           PP + LS  P      R+    L+ HH R   P
Sbjct: 130 PPSVSLSSPPREPGTPRINFTKLKRHHPRYKRP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,143
Number of Sequences: 438
Number of extensions: 2777
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)