Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0532
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25470.1 68417.m03667 DRE-binding protein (DREB1C) / CRT/DRE-...    27   9.9  
At4g12370.1 68417.m01955 hypothetical protein                          27   9.9  
At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma mem...    27   9.9  

>At4g25470.1 68417.m03667 DRE-binding protein (DREB1C) /
           CRT/DRE-binding factor 2 (CBF2) identical to DREB1C
           GI:3738228 from [Arabidopsis thaliana], DREB1C
           [Arabidopsis thaliana] GI:3660552, CRT/DRE binding
           factor 2 [Arabidopsis thaliana] GI:4091984; contains
           Pfam profile PF00847: AP2 domain; identical to cDNA
           CRT/DRE binding factor 2 (CBF2) GI:4322227
          Length = 216

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 425 GNNYHSVFGEGGDTSTPPLLDLSEFPSLQQEARVTKHPL 541
           G++Y S    GGD S        + P+ +++ R T+HP+
Sbjct: 12  GSDYESPVSSGGDYSPKLATSCPKKPAGRKKFRETRHPI 50


>At4g12370.1 68417.m01955 hypothetical protein
          Length = 300

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 603 FRCRLLHHTNIGFRARRWWCCSG 535
           FR   L+H+N+ +  RR++C  G
Sbjct: 121 FRSETLNHSNVVYAKRRFYCLDG 143


>At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA7)
           identical to SP|O64806 Potential calcium-transporting
           ATPase 7, plasma  membrane-type (EC 3.6.3.8)
           (Ca(2+)-ATPase isoform 7) {Arabidopsis thaliana}; strong
           similarity to SP|O81108 Calcium-transporting ATPase 2,
           plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
           2) {Arabidopsis thaliana}
          Length = 1015

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 239 GRLVACRNSTAMPGGAPPSMASRATLFGQRAFAD 340
           G+L AC N+  +  G P  ++ R  LFG   FA+
Sbjct: 124 GKLKACPNA-GLSTGEPEQLSKRQELFGINKFAE 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,020,160
Number of Sequences: 28952
Number of extensions: 208317
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)