Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0531
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 35 0.015
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 29 0.55
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 29 0.73
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 29 0.96
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 29 0.96
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 28 1.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.2
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 2.9
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 27 2.9
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.9
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 3.9
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 3.9
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 27 3.9
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 5.1
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 26 6.8
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.8
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 9.0
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 514 NNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLN--QSY-- 681
NNN+++++ N+ + NS + + + S +F +++GN K+ + N Q+Y
Sbjct: 564 NNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGN 623
Query: 682 KNPSNYEKQN 711
N NY N
Sbjct: 624 NNNQNYNNNN 633
Score = 29.1 bits (62), Expect = 0.73
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 514 NNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKN-- 687
N+N +N N + NSN + + + + + + F ++GN + +Y N
Sbjct: 519 NSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNN 578
Query: 688 --PSNYEKQNIQPIILVLANPYMNRPS 762
+N + Q + LA+ ++N S
Sbjct: 579 SGNNNQQHQQSSSSLQGLASSFLNSSS 605
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 29.5 bits (63), Expect = 0.55
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 523 DDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNPSNYE 702
DD N S+NSN Q+T + + + ++PT+D +EE LN+ K NYE
Sbjct: 306 DDFENSLHPSENSNSQATIPSKKRNFDDPTIDEMV--------QEEKLLNKQRKYGQNYE 357
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 29.1 bits (62), Expect = 0.73
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 511 PNNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNP 690
P + + N Q Q+T NT +NP T +++ ++ Q Y N
Sbjct: 623 PTQHTGSKFTNSAGQTIQAQATGNT-----HNPFQSQQATGYYKQPMQQQQNMQQPYYNQ 677
Query: 691 SNYEKQNIQPI 723
NY QN QP+
Sbjct: 678 QNYNYQNQQPM 688
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 28.7 bits (61), Expect = 0.96
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = +3
Query: 75 ENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTQDTVP 254
EN+I L N H Y Y K+ S + D+V+ L + E G +T DT
Sbjct: 311 ENVIRRLDNPHIHYHYFDFHKECSHMRWDRVSL------LLNEIQPELEEQGYTTLDTQK 364
Query: 255 KLFMYRQTAYKIINCI 302
+ RQ NC+
Sbjct: 365 YRVLSRQNGVVRSNCM 380
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 28.7 bits (61), Expect = 0.96
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 365 LYYIVKSNNFNAANNLEQSTILPQTSALNNDASYIIRYANKQPNEFS 505
++ I + ++ A N + I+P NN A Y+ + NK+P F+
Sbjct: 252 IHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFA 298
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 99 NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTQDTVP 254
N+H G ++++ +IVS+ K T + + S + +SG ST +P
Sbjct: 77 NNHDDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLP 128
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 526 DTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFT-NANGNRKKEELDLNQSYKN 687
D S + +S +Q+ + +D N+ N T NAN ++K E DLN+S+++
Sbjct: 964 DPSPKSASESSSFYQNGSDIDDNDSNSSNTSNHTTENANAQQRKLE-DLNRSFED 1017
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 508 FPNNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNAN 639
F + N D SN + G+ +SN TH + N T F NAN
Sbjct: 112 FHSANSDVSNNSNGALSSNMLKTH----AHHTNSTKSTIFRNAN 151
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +1
Query: 523 DDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNPSNYE 702
D N+N S+ Q ++ +N + + NG+R L ++S K PS+
Sbjct: 460 DSRPNVNTPSRRQQIQEEFGSVLQMENRAVSPVYDSRKNGSRSSFTLRKSRSPKRPSSSL 519
Query: 703 KQN 711
QN
Sbjct: 520 SQN 522
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 63 DKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTQ 242
D+ E L+ S ++G D+SI+ D V+ +DN +LYQ +N +
Sbjct: 19 DESNELFFSALSESSMNHG----TPDDSILL-DLVS-RSDNKDLYQDSLDVRDNFSNLSS 72
Query: 243 DTVPKLFMYRQT 278
D +P+ Y QT
Sbjct: 73 DEIPQSSSYEQT 84
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 589 RSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNPSN--YEKQNIQPI 723
RS+ N+ ++ + N N EEL L Q ++ PS + KQ+ Q I
Sbjct: 46 RSNDNSNKEFSYSKDVNNNGAVEELSLTQLFEVPSQAAFAKQSSQDI 92
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 314 SSGDSIIMSRAQTNKGPLYYIVKSNNFNAANNLEQS 421
SSGDS +S + ++KG L + S N + ++N E S
Sbjct: 238 SSGDSTPLSGSSSSKGMLMSMSTSENHSLSSNPELS 273
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 16 IATLKITRLLMNESLRISILKI*YLT*QIVINPMVTLV*I-RTSLLLVKTKWRLQMIMGI 192
++ L + N LR + +I Y Q + L+ + RTS V T+W L +M
Sbjct: 618 VSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSK--VATRWLLPALMAF 675
Query: 193 YIKVKNLVPKTQ 228
YI++++ TQ
Sbjct: 676 YIEIESTGQSTQ 687
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 529 TSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELD 666
T+N S +H + N +K +N N N N KKE+ D
Sbjct: 53 TTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDED 98
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 72 TENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 188
T+N IP LT ++YG + D S V + + NG
Sbjct: 211 TDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNG 249
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 6.8
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +1
Query: 511 PNNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNP 690
PN + S+ S +SNH S H+T VDN +N N N E +L S +
Sbjct: 33 PNVKQEKSDSTLSS-SSNHDSNHDT------PADVDN-SSNVNKNSSSPERELPTSPSHH 84
Query: 691 SNYE 702
+N E
Sbjct: 85 ANTE 88
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 580 NTIRSDKNNPTVDNFFTNANGNRK-KEELDLNQSYKNPSNYEKQNIQ 717
N+ S+ N + ++A+G R + E D +Q +NPS+Y +Q Q
Sbjct: 450 NSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQ 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,963
Number of Sequences: 5004
Number of extensions: 64478
Number of successful extensions: 248
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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