BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0531 (765 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 35 0.015 SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 29 0.55 SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 29 0.73 SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 29 0.96 SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 29 0.96 SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 28 1.7 SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.2 SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 2.9 SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 27 2.9 SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.9 SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 3.9 SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 3.9 SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 27 3.9 SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 5.1 SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 26 6.8 SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.8 SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 9.0 >SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 658 Score = 34.7 bits (76), Expect = 0.015 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Frame = +1 Query: 514 NNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLN--QSY-- 681 NNN+++++ N+ + NS + + + S +F +++GN K+ + N Q+Y Sbjct: 564 NNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGN 623 Query: 682 KNPSNYEKQN 711 N NY N Sbjct: 624 NNNQNYNNNN 633 Score = 29.1 bits (62), Expect = 0.73 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Frame = +1 Query: 514 NNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKN-- 687 N+N +N N + NSN + + + + + + F ++GN + +Y N Sbjct: 519 NSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNN 578 Query: 688 --PSNYEKQNIQPIILVLANPYMNRPS 762 +N + Q + LA+ ++N S Sbjct: 579 SGNNNQQHQQSSSSLQGLASSFLNSSS 605 >SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosaccharomyces pombe|chr 1|||Manual Length = 639 Score = 29.5 bits (63), Expect = 0.55 Identities = 20/60 (33%), Positives = 30/60 (50%) Frame = +1 Query: 523 DDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNPSNYE 702 DD N S+NSN Q+T + + + ++PT+D +EE LN+ K NYE Sbjct: 306 DDFENSLHPSENSNSQATIPSKKRNFDDPTIDEMV--------QEEKLLNKQRKYGQNYE 357 >SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual Length = 706 Score = 29.1 bits (62), Expect = 0.73 Identities = 19/71 (26%), Positives = 29/71 (40%) Frame = +1 Query: 511 PNNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNP 690 P + + N Q Q+T NT +NP T +++ ++ Q Y N Sbjct: 623 PTQHTGSKFTNSAGQTIQAQATGNT-----HNPFQSQQATGYYKQPMQQQQNMQQPYYNQ 677 Query: 691 SNYEKQNIQPI 723 NY QN QP+ Sbjct: 678 QNYNYQNQQPM 688 >SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 598 Score = 28.7 bits (61), Expect = 0.96 Identities = 22/76 (28%), Positives = 31/76 (40%) Frame = +3 Query: 75 ENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTQDTVP 254 EN+I L N H Y Y K+ S + D+V+ L + E G +T DT Sbjct: 311 ENVIRRLDNPHIHYHYFDFHKECSHMRWDRVSL------LLNEIQPELEEQGYTTLDTQK 364 Query: 255 KLFMYRQTAYKIINCI 302 + RQ NC+ Sbjct: 365 YRVLSRQNGVVRSNCM 380 >SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|Schizosaccharomyces pombe|chr 1|||Manual Length = 811 Score = 28.7 bits (61), Expect = 0.96 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +2 Query: 365 LYYIVKSNNFNAANNLEQSTILPQTSALNNDASYIIRYANKQPNEFS 505 ++ I + ++ A N + I+P NN A Y+ + NK+P F+ Sbjct: 252 IHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFA 298 >SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosaccharomyces pombe|chr 1|||Manual Length = 768 Score = 27.9 bits (59), Expect = 1.7 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +3 Query: 99 NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTQDTVP 254 N+H G ++++ +IVS+ K T + + S + +SG ST +P Sbjct: 77 NNHDDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLP 128 >SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 2685 Score = 27.5 bits (58), Expect = 2.2 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = +1 Query: 526 DTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFT-NANGNRKKEELDLNQSYKN 687 D S + +S +Q+ + +D N+ N T NAN ++K E DLN+S+++ Sbjct: 964 DPSPKSASESSSFYQNGSDIDDNDSNSSNTSNHTTENANAQQRKLE-DLNRSFED 1017 >SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 715 Score = 27.1 bits (57), Expect = 2.9 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +1 Query: 508 FPNNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNAN 639 F + N D SN + G+ +SN TH + N T F NAN Sbjct: 112 FHSANSDVSNNSNGALSSNMLKTH----AHHTNSTKSTIFRNAN 151 >SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharomyces pombe|chr 2|||Manual Length = 670 Score = 27.1 bits (57), Expect = 2.9 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = +1 Query: 523 DDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNPSNYE 702 D N+N S+ Q ++ +N + + NG+R L ++S K PS+ Sbjct: 460 DSRPNVNTPSRRQQIQEEFGSVLQMENRAVSPVYDSRKNGSRSSFTLRKSRSPKRPSSSL 519 Query: 703 KQN 711 QN Sbjct: 520 SQN 522 >SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 27.1 bits (57), Expect = 2.9 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = +3 Query: 63 DKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTQ 242 D+ E L+ S ++G D+SI+ D V+ +DN +LYQ +N + Sbjct: 19 DESNELFFSALSESSMNHG----TPDDSILL-DLVS-RSDNKDLYQDSLDVRDNFSNLSS 72 Query: 243 DTVPKLFMYRQT 278 D +P+ Y QT Sbjct: 73 DEIPQSSSYEQT 84 >SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp9|Schizosaccharomyces pombe|chr 2|||Manual Length = 778 Score = 26.6 bits (56), Expect = 3.9 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +1 Query: 589 RSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNPSN--YEKQNIQPI 723 RS+ N+ ++ + N N EEL L Q ++ PS + KQ+ Q I Sbjct: 46 RSNDNSNKEFSYSKDVNNNGAVEELSLTQLFEVPSQAAFAKQSSQDI 92 >SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces pombe|chr 2|||Manual Length = 681 Score = 26.6 bits (56), Expect = 3.9 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +2 Query: 314 SSGDSIIMSRAQTNKGPLYYIVKSNNFNAANNLEQS 421 SSGDS +S + ++KG L + S N + ++N E S Sbjct: 238 SSGDSTPLSGSSSSKGMLMSMSTSENHSLSSNPELS 273 >SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1010 Score = 26.6 bits (56), Expect = 3.9 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +1 Query: 16 IATLKITRLLMNESLRISILKI*YLT*QIVINPMVTLV*I-RTSLLLVKTKWRLQMIMGI 192 ++ L + N LR + +I Y Q + L+ + RTS V T+W L +M Sbjct: 618 VSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSK--VATRWLLPALMAF 675 Query: 193 YIKVKNLVPKTQ 228 YI++++ TQ Sbjct: 676 YIEIESTGQSTQ 687 >SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosaccharomyces pombe|chr 1|||Manual Length = 990 Score = 26.2 bits (55), Expect = 5.1 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = +1 Query: 529 TSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELD 666 T+N S +H + N +K +N N N N KKE+ D Sbjct: 53 TTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDED 98 >SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosaccharomyces pombe|chr 2|||Manual Length = 436 Score = 25.8 bits (54), Expect = 6.8 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +3 Query: 72 TENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 188 T+N IP LT ++YG + D S V + + NG Sbjct: 211 TDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNG 249 >SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 1254 Score = 25.8 bits (54), Expect = 6.8 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = +1 Query: 511 PNNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKNP 690 PN + S+ S +SNH S H+T VDN +N N N E +L S + Sbjct: 33 PNVKQEKSDSTLSS-SSNHDSNHDT------PADVDN-SSNVNKNSSSPERELPTSPSHH 84 Query: 691 SNYE 702 +N E Sbjct: 85 ANTE 88 >SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizosaccharomyces pombe|chr 2|||Manual Length = 591 Score = 25.4 bits (53), Expect = 9.0 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +1 Query: 580 NTIRSDKNNPTVDNFFTNANGNRK-KEELDLNQSYKNPSNYEKQNIQ 717 N+ S+ N + ++A+G R + E D +Q +NPS+Y +Q Q Sbjct: 450 NSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQ 496 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,022,963 Number of Sequences: 5004 Number of extensions: 64478 Number of successful extensions: 248 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 226 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 242 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 367316502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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