Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0531
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    34   0.002
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.33 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.77 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.5  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 535 NMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTN-ANGNRKKE-ELDLNQSYKNPSNYEKQ 708
           N N G+QN+++Q+  N    + NN   DN   N  NGNR+ +   + N+   N  N  KQ
Sbjct: 424 NQNAGNQNADNQNADN---QNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQ 480

Query: 709 N 711
           N
Sbjct: 481 N 481



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 517 NNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKE-ELDLNQSYKNPS 693
           NN +  N N   QN N Q+  N    +K N    N     NGNR+ + + + N+   N  
Sbjct: 443 NNQNADNQNANKQNGNRQN-DNRQNDNKQNGNRQN-DNKQNGNRQNDNKQNGNRQNGNKQ 500

Query: 694 NYEKQN 711
           N  KQN
Sbjct: 501 NDNKQN 506



 Score = 31.1 bits (67), Expect = 0.012
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +1

Query: 520 NDDTSNMNFGSQNSNHQSTHNTIRSDKN-NPTVDNFFTN--ANGNRKKE-ELDLNQSYKN 687
           N +  N N  +QN+N+Q+  N   + +N N   DN   +   NGNR+ + + + N+   N
Sbjct: 429 NQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDN 488

Query: 688 PSNYEKQN 711
             N  +QN
Sbjct: 489 KQNGNRQN 496



 Score = 29.5 bits (63), Expect = 0.036
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 517 NNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKKE-ELDLNQSYKNPS 693
           +N +  N N  +QN+++Q+ +N   +D  N    N     N NR+ + + + N+   N  
Sbjct: 423 HNQNAGNQNADNQNADNQNANNQ-NADNQNANKQN-GNRQNDNRQNDNKQNGNRQNDNKQ 480

Query: 694 NYEKQN 711
           N  +QN
Sbjct: 481 NGNRQN 486


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 520 NDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANG 642
           N + S +  G+ N+N  + +N   ++ NN    N   N NG
Sbjct: 222 NSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNG 262



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 526 DTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNANGN 645
           +++N    + N+N  +++N   ++ NN   +    N NGN
Sbjct: 222 NSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGN 261



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 514 NNNDDTSNMNFGSQNSNHQSTHNTIRSDKNN 606
           NNN++ +N N  +  +N     N   ++ NN
Sbjct: 239 NNNNNNNNNNNNNNGANDNGNGNGASNNNNN 269


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 514 NNNDDTSNMNFGSQNSNHQSTHNT 585
           NNN  ++N N+ +  +N+ + +NT
Sbjct: 84  NNNSLSNNYNYNNNYNNYNNNYNT 107


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 371 YIVKSNNFNAANNLEQSTILPQTSALNNDASYII--RYANKQPNEFSN 508
           Y   S+    A NL+ S      + +NN  +YI+   Y++K   E+++
Sbjct: 169 YFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKNMREYND 216


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 371 YIVKSNNFNAANNLEQSTILPQTSALNNDASYII--RYANKQPNEFSN 508
           Y   S+    A NL+ S      + +NN  +YI+   Y++K   E+++
Sbjct: 169 YFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMREYND 216


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 514 NNNDDTSNMNFGSQNSNHQSTHNTIRSDKNNPTVDNFFTNAN 639
           N +   +N N   QN+N+Q+ +N   + KN     N   N N
Sbjct: 411 NTHCVNNNQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQNDN 452


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 517 NNDDTSNMNFGSQNSNHQSTHNTIRS 594
           +++D  N  + +QN+NH ++H  +R+
Sbjct: 107 SSNDPKNQ-YKNQNNNHYTSHQHLRT 131


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 562 NHQ--STHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKN 687
           NH+  + H  + SDKN   +   F     +    E+DL  +Y N
Sbjct: 494 NHKPFTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMN 537


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 562 NHQ--STHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKN 687
           NH+  + H  + SDKN   +   F     +    E+DL  +Y N
Sbjct: 494 NHKPFTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMN 537


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 562 NHQ--STHNTIRSDKNNPTVDNFFTNANGNRKKEELDLNQSYKN 687
           NH+  + H  + SDKN   +   F     +    E+DL  +Y N
Sbjct: 120 NHKPFTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMN 163


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 261 IIWAQYPVLRFLSFRNEILYFDIN 190
           I WA + V R L    +  Y DIN
Sbjct: 271 ICWAPFHVQRLLYVYEDSTYDDIN 294


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 89  RY*IFSMLILRLSFIKSRVILRV 21
           +Y +F+M+++ LS + + VIL V
Sbjct: 300 KYLLFTMILVGLSVVITIVILNV 322


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 550 SQNSNHQSTHNTIRSDKNNPTVDNFFTNANGNRKK 654
           S  + H + +     + NN   +N+  N N N KK
Sbjct: 319 SNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKK 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,685
Number of Sequences: 438
Number of extensions: 4697
Number of successful extensions: 32
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)