Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0530
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.6  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    23   2.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 99  YDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVE 218
           ++Y+ KV+ I  S     +LL RF     NLE    I V+
Sbjct: 165 FNYM-KVIFIHSSDTDGRALLGRFQTTSQNLEDDVEIKVQ 203


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 627 PEGDVIRPDAEPAD 668
           P GD++ P +EP D
Sbjct: 18  PSGDILSPSSEPLD 31


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 627 PEGDVIRPDAEPAD 668
           P GD++ P +EP D
Sbjct: 18  PSGDILSPSSEPLD 31


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 250 RPKSSDMGHGRAGAVPRHHV 309
           RP++ D GH     + R+ V
Sbjct: 427 RPRAKDYGHSSGSVIDRNGV 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,788
Number of Sequences: 438
Number of extensions: 3199
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)