Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0529
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_35182| Best HMM Match : CUB (HMM E-Value=0)                         28   6.0  
SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)                   28   8.0  

>SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 141 SGIYYKLIIFTVLALVIDKKLQDNSILRLKILKNIYNFTF 22
           S ++Y  ++ T+   V+D    DN IL +   K  YN TF
Sbjct: 277 SRLFYNEVLETIRLGVVDGVSGDNMILEINASKYAYNVTF 316


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 211 LRNFQTYLKWRLFVLANDIVLGT 143
           L+NFQ +L+W  F + N + +GT
Sbjct: 167 LKNFQVFLQWPNFYMNNVVFIGT 189


>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
          Length = 963

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 468 PF*HAIKNLFEIFNFERSKASLKIDYNSKSPWQ 566
           P  HA+   FE+FN ERS    K  Y+S   W+
Sbjct: 248 PITHALTLTFEVFNIERSS---KCKYDSVEIWE 277


>SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)
          Length = 574

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 585 KTCNIILSLATEFWNRDVKIQSL 653
           +TC I+LS+A EF+N D+  ++L
Sbjct: 141 ETCLIVLSIADEFYNLDLNKKAL 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,324,721
Number of Sequences: 59808
Number of extensions: 278495
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)