Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0529
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13290.2 68415.m01465 glycosyl transferase family 17 protein ...    30   1.2  
At2g13290.1 68415.m01464 glycosyl transferase family 17 protein ...    30   1.2  

>At2g13290.2 68415.m01465 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 361

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 154 QYRWPVQTDAILNTSGNFLAIFCFKTSNEFQLYSLVYSN 270
           QYR   QTD IL+ +G +   FCF+  NEF      YS+
Sbjct: 247 QYRHSRQTDLILSDAG-WHCSFCFRRLNEFVFKMKGYSH 284


>At2g13290.1 68415.m01464 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 361

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 154 QYRWPVQTDAILNTSGNFLAIFCFKTSNEFQLYSLVYSN 270
           QYR   QTD IL+ +G +   FCF+  NEF      YS+
Sbjct: 247 QYRHSRQTDLILSDAG-WHCSFCFRRLNEFVFKMKGYSH 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,612,085
Number of Sequences: 28952
Number of extensions: 199157
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)