Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0527
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   2.9  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   5.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   8.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   8.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 270 SHRDTCPAPLCCNAPSRPG 214
           S ++ CP P C     RPG
Sbjct: 84  SIKNECPEPTCDEPVHRPG 102


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 371 PPQP*RHVAGRPAGG 327
           PPQP  +    PAGG
Sbjct: 17  PPQPYMNAQDAPAGG 31


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 168 NSLGPD*NSSSLCHCSSG 115
           N    D  +S  CHCS G
Sbjct: 158 NGTCEDIGNSHRCHCSDG 175


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 419 PPYPSWPAT 393
           PPYP +P T
Sbjct: 208 PPYPFYPGT 216


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 422 RPPYPSWPATLVS 384
           R PY SWP   +S
Sbjct: 159 RHPYESWPFNTMS 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,503
Number of Sequences: 336
Number of extensions: 2342
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)