BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0527 (431 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 27 1.2 SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 2.2 SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 2.8 SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 5.0 SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 8.7 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 24 8.7 SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 24 8.7 SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 24 8.7 SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 24 8.7 >SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1116 Score = 27.1 bits (57), Expect = 1.2 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = -3 Query: 303 TTSSQLVRNTISHRDTCPAPLCCNAPSRPGA----PHYRHAGQS 184 T++S L RN ++HRD P P ++ R P RHA S Sbjct: 528 TSASVLTRNFVAHRDPPPPPTETSSLRRKNTLTRRPSIRHARSS 571 >SPAC22A12.14c |||BSD domain protein, unknown biological role|Schizosaccharomyces pombe|chr 1|||Manual Length = 347 Score = 26.2 bits (55), Expect = 2.2 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = +2 Query: 53 ENIQNIKSMFMIISRRRRHGAPEEQWHNELEFQSGPRLFHMLSEDWP 193 E +QN + IIS HG E W E+ +L E++P Sbjct: 143 ELVQNENTFTQIISEPS-HGITFESWEKEISIDGKTEEISLLLEEYP 188 >SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizosaccharomyces pombe|chr 2|||Manual Length = 372 Score = 25.8 bits (54), Expect = 2.8 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Frame = -3 Query: 267 HRDTCPAPLCCNAPSRPGA--PHYRHAGQSSDS 175 H + P P C +P PGA P H+ SD+ Sbjct: 185 HNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDN 217 >SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pombe|chr 2|||Manual Length = 662 Score = 25.0 bits (52), Expect = 5.0 Identities = 17/58 (29%), Positives = 31/58 (53%) Frame = +2 Query: 257 VSLCEMVFRTNWLLVVKARKPYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVL 430 VSL FR++ +L + R Y +LL+D + ++ P A R+RK++ ++L Sbjct: 256 VSLQSFQFRSSQILSLCFRPKYKMLLVDTFNYELNSYQLYLIPGYA-RSRKNEQPILL 312 >SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 384 Score = 24.2 bits (50), Expect = 8.7 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -3 Query: 375 KTTSALKARCWSSSRRRLYGFRAFTTSSQLVR 280 K +L+ + WS S R+ Y F + L+R Sbjct: 337 KGVKSLEFKIWSRSLRKNYNFEQLLRARDLIR 368 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 24.2 bits (50), Expect = 8.7 Identities = 10/53 (18%), Positives = 24/53 (45%) Frame = -1 Query: 257 PAQLLFAVMRLLDQGLHIIDTQASLQTACETALVLIETQARYATALPARHVFD 99 P ++ F + R+L + + + + + CE + ++ T A+ V+D Sbjct: 2174 PEKIPFRLTRMLVNAMEVSGIEGTFRITCEHVMRVLRTNKESVMAVLEAFVYD 2226 >SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 568 Score = 24.2 bits (50), Expect = 8.7 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +2 Query: 35 SENVQSENIQNIKSMFMIISRRRRHGAPEEQWHNELEF 148 + N+ + +IQN KS+ ++I + Q NE++F Sbjct: 287 ARNIVTSDIQNEKSLLLLIRDLKEKQTESFQDWNEVDF 324 >SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pombe|chr 2|||Manual Length = 368 Score = 24.2 bits (50), Expect = 8.7 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +1 Query: 289 LAARGESSEAVQPPPAGRPATCLQ 360 LAA+ + SEA+ P G+PA + Sbjct: 202 LAAQQQQSEALAPTSTGQPANLFE 225 >SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 398 Score = 24.2 bits (50), Expect = 8.7 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +1 Query: 190 ACVSIMWSPWSRRRITAKRSWAGV--PMRDG 276 A S+ WS R +TA R W + +RDG Sbjct: 68 AIQSVCWSSCDRFLLTASRDWKCILWDLRDG 98 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,810,643 Number of Sequences: 5004 Number of extensions: 37029 Number of successful extensions: 111 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 111 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 154067960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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