Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0527
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    26   2.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   2.8  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    25   5.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   8.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   8.7  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    24   8.7  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    24   8.7  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    24   8.7  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 303 TTSSQLVRNTISHRDTCPAPLCCNAPSRPGA----PHYRHAGQS 184
           T++S L RN ++HRD  P P   ++  R       P  RHA  S
Sbjct: 528 TSASVLTRNFVAHRDPPPPPTETSSLRRKNTLTRRPSIRHARSS 571


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 53  ENIQNIKSMFMIISRRRRHGAPEEQWHNELEFQSGPRLFHMLSEDWP 193
           E +QN  +   IIS    HG   E W  E+          +L E++P
Sbjct: 143 ELVQNENTFTQIISEPS-HGITFESWEKEISIDGKTEEISLLLEEYP 188


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -3

Query: 267 HRDTCPAPLCCNAPSRPGA--PHYRHAGQSSDS 175
           H +  P P C  +P  PGA  P   H+   SD+
Sbjct: 185 HNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDN 217


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 257 VSLCEMVFRTNWLLVVKARKPYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVL 430
           VSL    FR++ +L +  R  Y +LL+D       +  ++  P  A R+RK++  ++L
Sbjct: 256 VSLQSFQFRSSQILSLCFRPKYKMLLVDTFNYELNSYQLYLIPGYA-RSRKNEQPILL 312


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 375 KTTSALKARCWSSSRRRLYGFRAFTTSSQLVR 280
           K   +L+ + WS S R+ Y F     +  L+R
Sbjct: 337 KGVKSLEFKIWSRSLRKNYNFEQLLRARDLIR 368


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/53 (18%), Positives = 24/53 (45%)
 Frame = -1

Query: 257  PAQLLFAVMRLLDQGLHIIDTQASLQTACETALVLIETQARYATALPARHVFD 99
            P ++ F + R+L   + +   + + +  CE  + ++ T      A+    V+D
Sbjct: 2174 PEKIPFRLTRMLVNAMEVSGIEGTFRITCEHVMRVLRTNKESVMAVLEAFVYD 2226


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 35  SENVQSENIQNIKSMFMIISRRRRHGAPEEQWHNELEF 148
           + N+ + +IQN KS+ ++I   +       Q  NE++F
Sbjct: 287 ARNIVTSDIQNEKSLLLLIRDLKEKQTESFQDWNEVDF 324


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 289 LAARGESSEAVQPPPAGRPATCLQ 360
           LAA+ + SEA+ P   G+PA   +
Sbjct: 202 LAAQQQQSEALAPTSTGQPANLFE 225


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +1

Query: 190 ACVSIMWSPWSRRRITAKRSWAGV--PMRDG 276
           A  S+ WS   R  +TA R W  +   +RDG
Sbjct: 68  AIQSVCWSSCDRFLLTASRDWKCILWDLRDG 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,643
Number of Sequences: 5004
Number of extensions: 37029
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)