SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0527
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603...    47   8e-06
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350...    36   0.014
02_05_1034 - 33649634-33649651,33649699-33649811,33649938-336500...    35   0.032
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    32   0.23 
11_04_0328 + 16437947-16438091,16439953-16440062,16440446-164405...    31   0.40 
01_01_1064 + 8393519-8394475                                           30   0.70 
01_01_1155 + 9191249-9192439                                           29   1.2  
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504...    29   1.6  
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    29   2.1  
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210...    29   2.1  
05_04_0116 + 18131510-18133192                                         28   2.8  
02_05_0171 - 26441007-26441918                                         28   2.8  
07_01_0937 + 7935940-7936536                                           28   3.7  
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859     28   3.7  
02_03_0250 - 16832371-16833016,16833130-16833287,16834393-16834413     27   4.9  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    27   6.5  
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086...    27   6.5  
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369...    27   6.5  
11_01_0627 - 5047751-5047758,5047799-5048015,5048759-5049646           27   8.6  
09_06_0022 - 20291787-20291864,20291989-20292010,20292269-202932...    27   8.6  
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402     27   8.6  
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601...    27   8.6  
01_07_0082 - 40965947-40967023                                         27   8.6  
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310...    27   8.6  

>01_07_0081 -
           40959279-40959375,40959463-40959589,40960138-40960339,
           40962414-40963361
          Length = 457

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = +2

Query: 209 GAPGREGALQQRGAGQVSLCEMVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVV 373
           GA G  G     G G + + EM+FR N L +V         P  +++ DD Q     E+ 
Sbjct: 136 GAAGDNGV--GGGGGGIGVVEMLFRCNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELS 193

Query: 374 FKSPIRALRARKDKVAVVL 430
           F+SP+R +R R+D++ VVL
Sbjct: 194 FRSPVRGVRLRRDRIIVVL 212



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 141 LSFNQDQGCFTCCLKTGLRVYNVEPLVE 224
           +SFNQD GCF    K+G R+YN +P  E
Sbjct: 102 ISFNQDYGCFAAGTKSGFRIYNCDPFRE 129


>01_01_0476 +
           3505799-3506479,3506639-3506897,3508427-3508550,
           3508922-3509030
          Length = 390

 Score = 35.9 bits (79), Expect = 0.014
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +2

Query: 215 PGREGALQQRGAGQVSLCEMVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFK 379
           P +E   +   +G   + EM+FR N L +V         P  +++ DD +     E  F+
Sbjct: 47  PFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNAHYPPNKVMIWDDHRSHCIGEFAFR 106

Query: 380 SPIRALRARKDKVAVVL 430
           S +RA++  KD + +VL
Sbjct: 107 SDVRAVKLGKDYIVIVL 123



 Score = 34.7 bits (76), Expect = 0.032
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 132 ITSLSFNQDQGCFTCCLKTGLRVYNVEPLVE 224
           + S+S+NQD GCF      G R++N +P  E
Sbjct: 20  LLSVSWNQDFGCFAAGTSNGFRIFNCDPFKE 50


>02_05_1034 -
           33649634-33649651,33649699-33649811,33649938-33650029,
           33650212-33650321,33650444-33650517,33650877-33650950,
           33651091-33651158
          Length = 182

 Score = 34.7 bits (76), Expect = 0.032
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +2

Query: 239 QRGAGQVSLCEMVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRA 403
           Q+  G +   EM FRTN L +V   +     P  L L+D      K ++ FK+ + A+R 
Sbjct: 46  QKNIGGIGNMEMYFRTNILAIVGTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTSVLAVRL 105

Query: 404 RKDKVAVVL 430
            + ++ VVL
Sbjct: 106 SRTRLVVVL 114


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 99  VEDMARRKSSGIT--SLSFNQDQGCFTCCLKTGLRVYNVEPLVE 224
           VE+ +     G+   S+S+NQD  CF      G RV++ +P  E
Sbjct: 202 VEEASGSDDDGVELLSVSWNQDNSCFIAATTNGFRVFSCKPFHE 245



 Score = 30.7 bits (66), Expect = 0.53
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +2

Query: 251 GQVSLCEMVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDK 415
           G + + EM+FRT+   +  A       P  L L DD       +  F S IRA+R  KD 
Sbjct: 255 GGIGIAEMLFRTSIFGLAGAESNTEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDY 314

Query: 416 VAVVL 430
             VVL
Sbjct: 315 FVVVL 319


>11_04_0328 +
           16437947-16438091,16439953-16440062,16440446-16440514,
           16440840-16440955,16441049-16441103,16441206-16441326,
           16441541-16441635,16441728-16441826
          Length = 269

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 44  VQSENIQNIKSMFMII---SRRRRHGAPEEQWHNELEFQSGPRLFHMLSEDWPACL*CGA 214
           VQ E +Q ++    +    SRR    A +  WH     Q    L  ++SE W      G 
Sbjct: 84  VQEERLQRLRHRMKVYFDPSRRDHQEALKALWHATYPDQE---LQGLISEQWKDM---GW 137

Query: 215 PGREGALQQRGAGQVSLCEMVF 280
            GR+ +   RGAG +SL  ++F
Sbjct: 138 QGRDPSTDFRGAGFISLENLLF 159


>01_01_1064 + 8393519-8394475
          Length = 318

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 252 PAPLCCNAPSRPGAPHYRHAGQSSDSM*NSLGPD*NSSSLCHCSSGAPCLRRR 94
           P P    + S P +PH     + SDS  +S     ++SS    SS A   RRR
Sbjct: 154 PPPRRARSASPPRSPHLAKIAEPSDSFASSSSSSTSTSSSSSSSSSAKSTRRR 206


>01_01_1155 + 9191249-9192439
          Length = 396

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
 Frame = -1

Query: 350 VAGRPAGGGCTASELSPRAASWCG-------TPSRIGTPAQLL-FAVMRL-LDQGLHIID 198
           V   P GGG TA+   P  A   G        PSR+G  + +  F V+ L L  G  ++D
Sbjct: 181 VPAAPGGGGATAAAAGPAPAGTIGYLDPCYTEPSRLGPESDVFSFGVVLLELVSGRKVMD 240

Query: 197 TQASLQTACETALVLI 150
             AS  +    A+ L+
Sbjct: 241 VSASPSSIVAWAVPLV 256


>04_04_1592 -
           34649484-34649547,34650118-34650186,34650325-34650444,
           34650630-34650742,34650824-34650898,34651224-34651346,
           34651427-34651446,34652354-34652410,34652922-34653860,
           34653961-34654189,34654296-34654439,34654527-34654601,
           34655363-34655433,34656103-34656205,34656407-34656633,
           34656791-34656908,34657239-34657369,34657709-34657802
          Length = 923

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 120 KSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPL 218
           +++G+ S++FN D     C L   L+V++ EP+
Sbjct: 248 ETTGVRSMTFNPDGRSLLCGLHESLKVFSWEPI 280


>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 425 QRPPYPSWPATLVSAT*RPPQP*RHVAGRPAGGGCTASELSPRA 294
           Q PP PS P  + S    PP P       PA     AS+ SP+A
Sbjct: 430 QPPPPPSHPTPITSVAPAPPPP------PPAAAAAAASQPSPQA 467


>08_02_1046 -
           23919990-23920183,23920251-23920479,23920624-23921057,
           23921426-23921567,23922163-23922255,23923132-23923245,
           23924181-23924266,23924458-23924506,23924717-23924783,
           23925550-23925665,23925698-23925821,23926465-23926553,
           23926810-23927061
          Length = 662

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 280 PHQLAARGESSEAVQPPPAGRPA 348
           P   AARGE++ + QPPP   PA
Sbjct: 56  PPAAAARGEANRSWQPPPLENPA 78


>05_04_0116 + 18131510-18133192
          Length = 560

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -1

Query: 335 AGGGCTASELSPRAASWCGTPSRIGTPAQLLFAVMRLLDQGLHIIDTQASLQTACETALV 156
           AG   T +  SP AA+     +    PA +   V RLL +G H++  +A + T  E    
Sbjct: 369 AGILSTTAPPSPAAAAAASMITSPLPPANMSSKVDRLL-RGFHLLSPRAIILTENEANHF 427

Query: 155 LIETQARYATALP 117
           +     R+A+ALP
Sbjct: 428 VPSFTDRFASALP 440


>02_05_0171 - 26441007-26441918
          Length = 303

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 271 DGVPHQLAARGESSEAVQPPPAGRPATCLQG*GGLQVAD 387
           D + H L    E + A  P P  RP  C     G  VAD
Sbjct: 14  DSIRHHLLEEEEETPATAPAPTRRPVYCRSSSFGSLVAD 52


>07_01_0937 + 7935940-7936536
          Length = 198

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 193 CVSIMWSPWSRRRITAKRSWAGVPMRDGVPHQLAARGESSEAVQPPPAGRPAT 351
           CV+++ + ++    +     A V + DG+P  +AARG  +E +    A   AT
Sbjct: 49  CVTVLHTRFNALDPSRHPELAFVEVADGIPPDVAARGRVAEIILAMNAAMEAT 101


>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
          Length = 429

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 419 PPYPSWPATLV-SAT*RPPQP*RHVAGRPAGGGCTA 315
           PP P  PA++V S   RPPQP R +  RP  G   A
Sbjct: 173 PPPPQPPASVVASLAARPPQP-RQLQRRPQDGAYRA 207


>02_03_0250 - 16832371-16833016,16833130-16833287,16834393-16834413
          Length = 274

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -1

Query: 338 PAGGGCTASELSPRAASWCGTPSRIGTPAQLLFAVMR 228
           PA   C A   SPR   WC    R   PA+LL A  R
Sbjct: 52  PADAECVAGS-SPRR--WCARIDRAIAPAELLLAAFR 85


>11_01_0110 +
           850780-850805,851465-851537,851558-851720,851947-852260,
           852330-852409,852506-852848,853068-853166,853240-853360,
           853567-853723,853976-854099,855275-855368,855866-857259,
           857882-857924,858240-858458,859379-859605,859701-859948,
           860246-860552,860725-861153
          Length = 1486

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 246 PLCCNAPSRPGAPHYRHAGQSSDSM 172
           PL C   S P APH RH+   S S+
Sbjct: 45  PLPCYLQSPPSAPHPRHSAAFSRSL 69


>06_02_0206 +
           13005863-13005966,13006918-13007080,13008534-13008632,
           13008704-13008817,13009094-13009254,13009746-13009827,
           13009972-13010057,13011563-13011742,13011913-13012424,
           13012844-13013478
          Length = 711

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 226 RRITAKRSW--AGVPMRDGVPHQLAARGESSEAVQPPPAGRP 345
           +R+ AK     AG+ +R   P  + ARG+ S +++P  A +P
Sbjct: 286 QRVLAKHDAIAAGIAVRVEKPKSVQARGDKSPSIKPEGAKQP 327


>02_01_0509 +
           3694689-3695683,3695799-3695946,3696864-3696943,
           3697214-3698062,3698193-3698337,3698426-3698677,
           3698780-3699089,3699415-3699524
          Length = 962

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 395 TLVSAT*RPPQP*RHVAGRPAGGGCTASELSPRAASWCGTP-SRIGTPAQLLFAVMRLLD 219
           ++V++   PPQP RH A  P      A       A  CG P S +   AQL  +V+  ++
Sbjct: 154 SVVASLHAPPQPPRHAA--PTSAPAAAE------AHTCGVPNSHLSACAQLYLSVVYKME 205

Query: 218 QGLHI 204
           +  H+
Sbjct: 206 RNDHV 210


>11_01_0627 - 5047751-5047758,5047799-5048015,5048759-5049646
          Length = 370

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +2

Query: 191 PACL*CGAP---GREGALQQRGAGQVSLCEMVFRTNWLLVVKARKPYSLLLLDDQQRAFK 361
           P C  CGA      +G +  +G    S  E+   +    V   ++PY+ + ++D  +  K
Sbjct: 260 PGCFDCGANKVIDCDGCVLLQGLSGTSTLELKAESRVQQVYLLQEPYNFVEIEDSDKPLK 319

Query: 362 AEVVFKS 382
               FK+
Sbjct: 320 QAFPFKN 326


>09_06_0022 -
           20291787-20291864,20291989-20292010,20292269-20293218,
           20293339-20293629
          Length = 446

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 301 GESSEAVQPPPAGRPA 348
           GESSEAV PPP   PA
Sbjct: 273 GESSEAVPPPPPLPPA 288


>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
          Length = 566

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 340 RPATCLQG*GGLQ-VADTSVAGQEG*GG 420
           RPA C +G GGL  +ADT+V G    GG
Sbjct: 253 RPALCREGGGGLAGLADTAVHGVALVGG 280


>02_05_0968 +
           33156585-33156941,33158510-33159902,33160035-33160118,
           33160216-33160265
          Length = 627

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 220 SRRRITAKRSWAGVPMRDGVPHQLAARGESSEAVQPPPAGRPATCLQG*GGLQVADTSVA 399
           S ++    RS++    +  +P   A R  S E   PP + RP T   G G  +VA  +  
Sbjct: 141 SGKKHARTRSFSSTATKSSLPDAGARRALSQEPPPPPTSERPTTA--GAGSHRVARVTGG 198

Query: 400 G 402
           G
Sbjct: 199 G 199


>01_07_0082 - 40965947-40967023
          Length = 358

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 428 GQRPPYPSWPATLVSAT*RPPQ 363
           GQ PP P++P +  +A   PPQ
Sbjct: 152 GQAPPAPAYPPSAAAAAAYPPQ 173


>01_05_0485 -
           22628999-22629325,22630340-22630450,22630888-22631034,
           22631283-22631337,22631761-22632134,22632926-22633000,
           22633419-22633670
          Length = 446

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 217 WSRRRITAKRSWAGVPMRDGVPHQL 291
           W R RI  +R+WAG  +R+  P  L
Sbjct: 50  WCRCRIGLQRAWAGCNLRNTGPKSL 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,875
Number of Sequences: 37544
Number of extensions: 322276
Number of successful extensions: 1282
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -