Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0527
(431 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.31
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20) 31 0.53
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_35454| Best HMM Match : SRP-alpha_N (HMM E-Value=6.1) 29 1.2
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_30632| Best HMM Match : Acyltransferase (HMM E-Value=0.0097) 29 1.2
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 2.8
SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29) 28 3.8
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 3.8
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18) 28 3.8
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 27 5.0
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_26158| Best HMM Match : WD40 (HMM E-Value=1.1) 27 6.6
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) 27 8.7
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054) 27 8.7
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 31.9 bits (69), Expect = 0.23
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = -1
Query: 368 PQP*RHVAGRPAGGGCTASELSPRAASWCGTPSRIGTPAQLLFAVMRLLDQGLHIIDTQA 189
P+ R G PA CT ++ S + +S C + A + A+MRL+ +G+H T
Sbjct: 305 PRAIRCKIGCPAS--CTCTKASSKCSSLCSSIESFNDKAAVNAALMRLVQRGMHQEPTLP 362
Query: 188 SLQTACETAL 159
S Q + AL
Sbjct: 363 SDQMNYKPAL 372
>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 31.5 bits (68), Expect = 0.31
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 260 TPAQLLFAVMRLLDQGLHIIDTQASLQTACETALVLIETQARYATALPARHVFD 99
T QLL + LLD L + D +S AC+ L +++ + T R +FD
Sbjct: 237 TSCQLLGNLCVLLDYNLDLYDGSSSTTDACKEFLDIVDIRTEKVTGKTIRTIFD 290
>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
Length = 315
Score = 30.7 bits (66), Expect = 0.53
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 428 GQRPPYPSWPATLVSAT*RPPQP 360
G RPPYP +P T SAT P P
Sbjct: 61 GYRPPYPGYPPTSSSATPYPATP 83
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 30.3 bits (65), Expect = 0.71
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -1
Query: 425 QRPPYPSWPATLVSAT*RPPQP*RHVAGRPAGGGCTASELSPRAASWCGTPSRIGTP 255
Q PP S P+ T +P QP RP GG + P + G P R G+P
Sbjct: 449 QGPPSQSTPSQQAPPTKQPMQPQHQYQARP-GGPPQQRQYPPSSTPQQGFPQRPGSP 504
>SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 30.3 bits (65), Expect = 0.71
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 326 LLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVL 430
+++ DD ++ E+ F S +RA++ R+D++ VVL
Sbjct: 23 VMVWDDLKKKCVIELDFSSDVRAVKLRRDRIVVVL 57
>SB_35454| Best HMM Match : SRP-alpha_N (HMM E-Value=6.1)
Length = 211
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -2
Query: 409 LPGPQRSYRRLEDHLSLEGTLLVVQQEEAVRLPSFHHEQP 290
LP P+ + +R HLS +LL + E+VR PSF QP
Sbjct: 63 LPPPKVTVKRTATHLSSLASLLPKPKNESVR-PSFPDTQP 101
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 98 RRRHGAPEEQWHNELEFQSGPRLFHMLSEDWPACL*CGAPGREGALQQRGAGQVSLCEMV 277
R +H AP + ++ +EF +G L + C G+PG+ L G G V++
Sbjct: 163 RIQHSAPADNFNRSVEFYAGVFLANCKDFFMENCTVFGSPGKGLVLYDVG-GNVNISAST 221
Query: 278 FRTN 289
F N
Sbjct: 222 FENN 225
>SB_30632| Best HMM Match : Acyltransferase (HMM E-Value=0.0097)
Length = 263
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 419 PPYPSWPATLVSAT*RPPQP*RHVAGR---PAGGGCTASELSPRAASWCGTPSRI 264
PP+ SW + + T RP Q R + G P G +A+EL+ W T R+
Sbjct: 72 PPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAELTFLVDWWSETDLRL 126
>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -1
Query: 419 PPYPSWPATLVSAT*RPPQP*RHVAGR---PAGGGCTASELSPRAASWCGTPSRIGTPAQ 249
PP+ SW + + T RP Q R + G P G +A+ S R G P+++ Q
Sbjct: 1123 PPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGNSARTEE--GRPTQLAEILQ 1180
Query: 248 --LLFAVMRLLDQGLHII 201
+ F + R +D+ + ++
Sbjct: 1181 GKINFFLYRPIDENVQVV 1198
>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 660
Score = 28.3 bits (60), Expect = 2.8
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Frame = -1
Query: 380 T*RPPQP*RHVAGRPAGGGCTASELSPRAASW--CGTPSR-IGTPAQLLFAVMRLLDQGL 210
T RPP+ + AG C+AS P +W C +R I + L+ +R D G
Sbjct: 364 TVRPPRKIKQYAGATVRVNCSASAEPPPKITWERCQGGTRVIASGESLVLRNLRYEDTGT 423
Query: 209 HIIDTQASLQTACETALVLIETQARYATALPARHV 105
+ T S +T+ V+ A+ + L AR V
Sbjct: 424 YTC-TATSRPLLAKTSFVIRVKIAKDCSMLYARGV 457
>SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)
Length = 1354
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 325 PPPAGRPATCLQG*GGLQVADTSVAG 402
PPPA P T QG QV D AG
Sbjct: 653 PPPADLPVTRTQGTSAYQVIDVDFAG 678
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 246 ELGRCPYARWCSAPTGCSW*KLGSR--TASSCWTTSNVPSRLRWSSSRR 386
EL C + C+ P G + K+ + TASS W ++ P R SR+
Sbjct: 4614 ELYGCRLGKMCNQPMGMNSGKIRNNRITASSKWDNNHAPFLARLKHSRK 4662
>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
Length = 1719
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 287 WCGTPSRIGTPA-QLLFAVMRLLDQGLHIIDTQASLQTACETALVLIETQARY 132
WC + + +F+ MR+LD G H D +++ + E LV + RY
Sbjct: 1386 WCSNDKSVWSCFYSYIFSCMRILDGGKHYYD--EAMRNSHEDLLVAVRNMRRY 1436
>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2250
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +2
Query: 221 REGALQQRGAGQVSLCEMVFRTNWLLVVKARKPYSLLLLDDQQRAFKAEVVFKSPIRALR 400
RE A Q R A +++ +R W++ ++ Y L + + Q KAE+ + + L+
Sbjct: 1997 RESASQGR-AVRINFTR--YRGKWVVAIQNSTEYRLGIQKNAQ--MKAELTLDAMAQHLK 2051
Query: 401 ARKDKVAVV 427
ARK K A+V
Sbjct: 2052 ARKSKGALV 2060
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 202 IMWSPWSRRRITAKRSWAGVP 264
I WS W +++ A+R W VP
Sbjct: 946 IQWSLWMSKQLNAERYWTRVP 966
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAG 339
G P +GVP + +G+ EA PP G
Sbjct: 649 GPPGDEGVPGPIGPKGDKCEACPKPPPG 676
>SB_26158| Best HMM Match : WD40 (HMM E-Value=1.1)
Length = 416
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 338 DDQQRAFKAEVVFKSPIRALRARKDKVAVVL 430
DD ++ E+ + SP+ +R ++DK+ V L
Sbjct: 154 DDSRKELVLEMTYGSPVTTVRMQRDKLFVAL 184
>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
Length = 739
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQP 327
G R+GV +LAA G++S A++P
Sbjct: 502 GGSARNGVSKELAANGDTSSAMEP 525
>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
Length = 596
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 187 LACVSIMWSPWSRRRITAKRSWAGVPMRDGVPHQLA 294
L C + W+ R + KRS G D +PH+ A
Sbjct: 29 LTCSICTRTNWTGRSLNQKRSLTGDTSHDLIPHECA 64
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 26.6 bits (56), Expect = 8.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -1
Query: 431 SGQRPPYPSWPATLVSAT*RPPQP*RH-----VAGRPAGGGCTASELSPRAASWCGTPSR 267
S +P PS +L+ A PPQ H V R + GG +ASE + + ++ C T
Sbjct: 502 SAGKPNIPS-QYSLIGAFETPPQTIPHKMEEQVTRRVSPGGDSASESTGKGSAQCDTERP 560
Query: 266 IGTPAQL 246
+ P ++
Sbjct: 561 VAPPRRV 567
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,998
Number of Sequences: 59808
Number of extensions: 332433
Number of successful extensions: 4403
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4402
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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