Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0527
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80027-12|AAC48126.2| 493|Caenorhabditis elegans Hypothetical p... 30 0.82
AF047655-1|AAC04402.1| 558|Caenorhabditis elegans Hypothetical ... 30 0.82
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 1.1
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 1.1
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 1.1
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 1.1
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 2.5
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 2.5
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 2.5
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 3.3
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 3.3
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 3.3
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 3.3
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 3.3
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 27 4.4
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 27 4.4
L23647-2|AAK29995.1| 773|Caenorhabditis elegans Hypothetical pr... 27 5.8
L23647-1|AAL11102.1| 624|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z78061-2|CAB01493.1| 474|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 7.7
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 7.7
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 7.7
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 27 7.7
>U80027-12|AAC48126.2| 493|Caenorhabditis elegans Hypothetical
protein T28A11.17 protein.
Length = 493
Score = 29.9 bits (64), Expect = 0.82
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 35 SENVQSENIQNIKSMFMIISRRRRHGAPEEQWHNELE 145
SEN+ E++ N+ + M++ R A EEQ N LE
Sbjct: 359 SENITHEDLPNLLGLRMVMKMVARKSANEEQLKNALE 395
>AF047655-1|AAC04402.1| 558|Caenorhabditis elegans Hypothetical
protein C17B7.8 protein.
Length = 558
Score = 29.9 bits (64), Expect = 0.82
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 35 SENVQSENIQNIKSMFMIISRRRRHGAPEEQWHNELE 145
SEN+ E++ N+ + M++ R A EEQ N LE
Sbjct: 401 SENITHEDLPNLLGLRMVMKMVARKSANEEQLKNALE 437
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3348 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3392
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3360 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3404
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3246 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3290
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3247 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3291
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3329 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3373
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3348 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3392
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3360 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3404
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3246 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3290
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3247 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3291
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3329 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3373
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3360 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3404
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3360 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3404
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 395 TLVSAT*RPPQP*RHVAG--RPAGGGCTASELSPRAASWCGTPSRI 264
T+ S+T R P P A +P+GG T E + R +W G PS +
Sbjct: 3360 TITSSTHRAPSPVFATASVSQPSGGATTTREFT-RTINWHGQPSEL 3404
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 312 RAFTTSSQLVRNTISHRDTCPAPLCCNAPSRPGAP 208
RA +SS ++I H P PL N P P AP
Sbjct: 184 RASQSSSTSAGSSIPHAPPPPVPLTSNIPQAPPAP 218
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 312 RAFTTSSQLVRNTISHRDTCPAPLCCNAPSRPGAP 208
RA +SS ++I H P PL N P P AP
Sbjct: 170 RASQSSSTSAGSSIPHAPPPPVPLTSNIPQAPPAP 204
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 312 RAFTTSSQLVRNTISHRDTCPAPLCCNAPSRPGAP 208
RA +SS ++I H P PL N P P AP
Sbjct: 170 RASQSSSTSAGSSIPHAPPPPVPLTSNIPQAPPAP 204
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPATCLQG*GGLQVAD--TSVAGQEG 411
G P G A G+ EA P PAG+ QG G Q + AGQ+G
Sbjct: 170 GAPGEAGPQGDAGAAGQDGEAGAPGPAGKNGQRGQGAPGPQGPEGPAGAAGQDG 223
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPATCLQG*GGLQVADTSVAGQEG*GG 420
G+P RDG+P +G+ ++ QP +G P L G G+ + G +G GG
Sbjct: 1120 GLPGRDGLPGVPGQKGDLGQSGQPGLSGAPG--LDGQPGV----PGIRGDKGQGG 1168
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPA-TCLQG*GGL 375
GVP RDG P +GE A P G P L+G GGL
Sbjct: 1341 GVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGL 1381
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPATCLQG*GGLQVADTSVAGQEG*GG 420
G+P RDG+P +G+ ++ QP +G P L G G+ + G +G GG
Sbjct: 1119 GLPGRDGLPGVPGQKGDLGQSGQPGLSGAPG--LDGQPGV----PGIRGDKGQGG 1167
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPA-TCLQG*GGL 375
GVP RDG P +GE A P G P L+G GGL
Sbjct: 1340 GVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGL 1380
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPATCLQG*GGLQVADTSVAGQEG*GG 420
G+P RDG+P +G+ ++ QP +G P L G G+ + G +G GG
Sbjct: 1119 GLPGRDGLPGVPGQKGDLGQSGQPGLSGAPG--LDGQPGV----PGIRGDKGQGG 1167
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPA-TCLQG*GGL 375
GVP RDG P +GE A P G P L+G GGL
Sbjct: 1340 GVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGL 1380
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPATCLQG*GGLQVADTSVAGQEG*GG 420
G+P RDG+P +G+ ++ QP +G P L G G+ + G +G GG
Sbjct: 1120 GLPGRDGLPGVPGQKGDLGQSGQPGLSGAPG--LDGQPGV----PGIRGDKGQGG 1168
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPA-TCLQG*GGL 375
GVP RDG P +GE A P G P L+G GGL
Sbjct: 1341 GVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGL 1381
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPATCLQG*GGLQVADTSVAGQEG*GG 420
G+P RDG+P +G+ ++ QP +G P L G G+ + G +G GG
Sbjct: 1156 GLPGRDGLPGVPGQKGDLGQSGQPGLSGAPG--LDGQPGV----PGIRGDKGQGG 1204
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 256 GVPMRDGVPHQLAARGESSEAVQPPPAGRPA-TCLQG*GGL 375
GVP RDG P +GE A P G P L+G GGL
Sbjct: 1377 GVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGL 1417
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 427 DNGHLILPGPQRSYRRLEDHLSLEGTLLVVQQEEAV 320
DN H L GP+ Y + + +GT L Q++A+
Sbjct: 175 DNSHRQLQGPENVYVAIMSEIERQGTRLSESQKQAL 210
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 241 KRSWAGVPMRDGVPHQLAARGESSEAVQPPPAGRP 345
+R AG P +DG P +G S E QP G+P
Sbjct: 221 QRGPAGEPGKDGSPGGQGEKGASGEPGQPGRDGQP 255
>L23647-2|AAK29995.1| 773|Caenorhabditis elegans Hypothetical
protein ZC262.3a protein.
Length = 773
Score = 27.1 bits (57), Expect = 5.8
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +3
Query: 138 SLSFNQDQG-CFTCCLKTGLRVYNVEPLVEKAHYSKEELGRCPYARWCSA-PTGCSW*KL 311
S F+ +Q C C L+ L VY + + + ++EE+ A TG + K
Sbjct: 329 SFDFSTNQLLCDKCLLQWSLPVYAQTSIRKDCNLTREEIESASCKIGVVANDTGIQYGKY 388
Query: 312 GSRTASSCWTTSNVPSRLRWSSSRRYERCG 401
TA SC++ ++ W R E+ G
Sbjct: 389 EKPTAISCFSYGVPSPKISWWRFRPAEKLG 418
>L23647-1|AAL11102.1| 624|Caenorhabditis elegans Hypothetical
protein ZC262.3b protein.
Length = 624
Score = 27.1 bits (57), Expect = 5.8
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +3
Query: 138 SLSFNQDQG-CFTCCLKTGLRVYNVEPLVEKAHYSKEELGRCPYARWCSA-PTGCSW*KL 311
S F+ +Q C C L+ L VY + + + ++EE+ A TG + K
Sbjct: 329 SFDFSTNQLLCDKCLLQWSLPVYAQTSIRKDCNLTREEIESASCKIGVVANDTGIQYGKY 388
Query: 312 GSRTASSCWTTSNVPSRLRWSSSRRYERCG 401
TA SC++ ++ W R E+ G
Sbjct: 389 EKPTAISCFSYGVPSPKISWWRFRPAEKLG 418
>Z78061-2|CAB01493.1| 474|Caenorhabditis elegans Hypothetical
protein C48G7.2 protein.
Length = 474
Score = 26.6 bits (56), Expect = 7.7
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 220 SRRRITAKRSWAG--VPMRDGVPHQLAARGESSEAVQPPPAGRPATCLQG*GGLQVADTS 393
S R I A RS G P +G L+A ES EAV+ R + + L+ D
Sbjct: 67 SARAIAAARSRGGGAAPSSNGNERPLSAYEESDEAVRQRKNRRASVAVMPMMELEYRDQV 126
Query: 394 VAG 402
VAG
Sbjct: 127 VAG 129
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 344 GRPAGGGCTASELSPRAASWCGTPSRIGTPAQ 249
G + GGC A L P AA GTP + G P +
Sbjct: 89 GSASAGGCDACCL-PGAAGPAGTPGKPGRPGK 119
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 344 GRPAGGGCTASELSPRAASWCGTPSRIGTPAQ 249
G + GGC A L P AA GTP + G P +
Sbjct: 89 GSASAGGCDACCL-PGAAGPAGTPGKPGRPGK 119
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 344 GRPAGGGCTASELSPRAASWCGTPSRIGTPAQ 249
G + GGC A L P AA GTP + G P +
Sbjct: 89 GAASAGGCDACCL-PGAAGPAGTPGKPGRPGK 119
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 344 GRPAGGGCTASELSPRAASWCGTPSRIGTPAQ 249
G + GGC A L P AA GTP + G P +
Sbjct: 89 GSASAGGCDACCL-PGAAGPAGTPGKPGRPGK 119
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 344 GRPAGGGCTASELSPRAASWCGTPSRIGTPAQ 249
G + GGC A L P AA GTP + G P +
Sbjct: 89 GSASAGGCDACCL-PGAAGPAGTPGKPGRPGK 119
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 344 GRPAGGGCTASELSPRAASWCGTPSRIGTPAQ 249
G + GGC A L P AA GTP + G P +
Sbjct: 89 GSASAGGCDACCL-PGAAGPAGTPGKPGRPGK 119
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 344 GRPAGGGCTASELSPRAASWCGTPSRIGTPAQ 249
G + GGC A L P AA GTP + G P +
Sbjct: 89 GSASAGGCDACCL-PGAAGPAGTPGKPGRPGK 119
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -1
Query: 419 PPYPSWPATLVSAT*RPPQP*RHVAGRPAGGGCTASELSPRAASWCGTPSRIGTPAQ 249
PP P PA QP G P+ GG + +P A G+P + G P Q
Sbjct: 189 PPGPPGPAGQAGRPGNDGQP-----GAPSFGGGVGAPGAPGPAGDAGSPGQPGAPGQ 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,430,347
Number of Sequences: 27780
Number of extensions: 245606
Number of successful extensions: 926
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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