Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0527
(431 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40810.2 68415.m05035 WD-40 repeat protein family similar to ... 43 8e-05
At2g40810.1 68415.m05034 WD-40 repeat protein family similar to ... 43 8e-05
At3g62770.2 68416.m07051 transport protein-related weak similari... 42 2e-04
At3g62770.1 68416.m07052 transport protein-related weak similari... 42 2e-04
At3g56440.1 68416.m06277 WD-40 repeat protein family contains 4 ... 42 2e-04
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 31 0.25
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 31 0.44
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 30 0.59
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 29 1.4
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 29 1.4
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 28 3.1
At5g05150.1 68418.m00547 transport protein-related contains 2 WD... 27 4.1
At1g62870.1 68414.m07099 expressed protein 27 4.1
At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein ... 27 5.5
At4g35920.3 68417.m05107 expressed protein contains Pfam profile... 27 5.5
At4g35920.2 68417.m05106 expressed protein contains Pfam profile... 27 5.5
At4g35920.1 68417.m05105 expressed protein contains Pfam profile... 27 5.5
At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to... 27 7.2
At2g34930.1 68415.m04288 disease resistance family protein conta... 27 7.2
At1g74720.1 68414.m08658 C2 domain-containing protein contains I... 27 7.2
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a... 26 9.6
>At2g40810.2 68415.m05035 WD-40 repeat protein family similar to
Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
PF00400: WD domain, G-beta repeats
Length = 393
Score = 43.2 bits (97), Expect = 8e-05
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Frame = +2
Query: 215 PGREGALQQRGAGQVSLCEMVFRTNWLLVV----KARKPYSLLLL-DDQQRAFKAEVVFK 379
P +E ++ G + EM+FR+N L +V ++ P S +L+ DD Q +E F+
Sbjct: 59 PFKETFRRELKDGGFKIVEMLFRSNILALVGGGPNSQYPSSKVLIWDDHQSRCISEFAFR 118
Query: 380 SPIRALRARKDKVAVVL 430
S IRA++ R+D++ VVL
Sbjct: 119 SEIRAVKLRRDRIVVVL 135
Score = 35.5 bits (78), Expect = 0.016
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 114 RRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVE 224
+++ + + S+ +NQD CF G R+YN EP E
Sbjct: 26 KKEEAELVSVCWNQDSSCFAAGTSHGFRIYNCEPFKE 62
>At2g40810.1 68415.m05034 WD-40 repeat protein family similar to
Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
PF00400: WD domain, G-beta repeats
Length = 393
Score = 43.2 bits (97), Expect = 8e-05
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Frame = +2
Query: 215 PGREGALQQRGAGQVSLCEMVFRTNWLLVV----KARKPYSLLLL-DDQQRAFKAEVVFK 379
P +E ++ G + EM+FR+N L +V ++ P S +L+ DD Q +E F+
Sbjct: 59 PFKETFRRELKDGGFKIVEMLFRSNILALVGGGPNSQYPSSKVLIWDDHQSRCISEFAFR 118
Query: 380 SPIRALRARKDKVAVVL 430
S IRA++ R+D++ VVL
Sbjct: 119 SEIRAVKLRRDRIVVVL 135
Score = 35.5 bits (78), Expect = 0.016
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 114 RRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVE 224
+++ + + S+ +NQD CF G R+YN EP E
Sbjct: 26 KKEEAELVSVCWNQDSSCFAAGTSHGFRIYNCEPFKE 62
>At3g62770.2 68416.m07051 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); putative proteins - different
species
Length = 432
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = +2
Query: 242 RGAGQVSLCEMVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRAR 406
RG G V++ EM+FR N L +V P +++ DD Q E+ F+S +R++R R
Sbjct: 116 RGGG-VAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLR 174
Query: 407 KDKVAVVL 430
+D++ VVL
Sbjct: 175 RDRIIVVL 182
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 132 ITSLSFNQDQGCFTCCLKTGLRVYNVEPLVE 224
+ LSFNQD CF G R+ N +P E
Sbjct: 78 VLHLSFNQDHACFAVGTDRGFRILNCDPFRE 108
>At3g62770.1 68416.m07052 transport protein-related weak similarity
to Gsa12p [Pichia pastoris] GI:18307769; contains 1
WD-40 repeat (PF00400); putative proteins - different
species
Length = 307
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = +2
Query: 242 RGAGQVSLCEMVFRTNWLLVVKARK-----PYSLLLLDDQQRAFKAEVVFKSPIRALRAR 406
RG G V++ EM+FR N L +V P +++ DD Q E+ F+S +R++R R
Sbjct: 116 RGGG-VAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLR 174
Query: 407 KDKVAVVL 430
+D++ VVL
Sbjct: 175 RDRIIVVL 182
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 132 ITSLSFNQDQGCFTCCLKTGLRVYNVEPLVE 224
+ LSFNQD CF G R+ N +P E
Sbjct: 78 VLHLSFNQDHACFAVGTDRGFRILNCDPFRE 108
>At3g56440.1 68416.m06277 WD-40 repeat protein family contains 4
WD-40 repeats (PF00400) (2 weak); PS00778 Histidine acid
phosphatases active site signature; similar to Gsa12p
(GI:18307769) {Pichia pastoris}similar to
uncharacterized protein JM5 (GP:3114828) [Homo sapiens]
Length = 391
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Frame = +2
Query: 215 PGREGALQQRGAGQVSLCEMVFRTNWLLVV----KARKPYSLLLL-DDQQRAFKAEVVFK 379
P +E ++ G + EM+FR+N L +V ++ P + +L+ DD Q +E F+
Sbjct: 63 PFKETFRRELKDGGFKIVEMLFRSNILALVGGGPNSQYPSNKVLIWDDHQGRCISEFTFR 122
Query: 380 SPIRALRARKDKVAVVL 430
S IRA++ R+D++ VVL
Sbjct: 123 SEIRAVKLRRDRIVVVL 139
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 96 GVEDMARRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLVE 224
G D + + S+S+NQD CF G R+YN EP E
Sbjct: 24 GPPDFGESDEAELVSVSWNQDYSCFAAGTSHGFRIYNCEPFKE 66
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 31.5 bits (68), Expect = 0.25
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +3
Query: 114 RRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLV 221
R +++G+ +++F+ D C L GL+VY+ EP++
Sbjct: 172 RPEATGVRAIAFHPDGQTLFCGLDDGLKVYSWEPVI 207
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 30.7 bits (66), Expect = 0.44
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 318 GFRAFTTSSQLVRNTISHRDTCPAPLCCNAPS 223
G RA T +RN+++HR + A C N+P+
Sbjct: 120 GLRAVITKHHNIRNSVNHRSSRGAQSCINSPA 151
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 30.3 bits (65), Expect = 0.59
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 114 RRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLV 221
R +++G+ S+ F+ D C L L+VY+ EP+V
Sbjct: 223 RPEATGVRSIKFHPDGRTLFCGLDDSLKVYSWEPVV 258
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 120 KSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPL 218
+++G+ LSFN D C L+ L++++ EP+
Sbjct: 226 ETAGVRCLSFNPDGKTVLCGLQESLKIFSWEPI 258
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 120 KSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPL 218
+++G+ LSFN D C L+ L++++ EP+
Sbjct: 226 ETAGVRCLSFNPDGKTVLCGLQESLKIFSWEPI 258
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 120 KSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPL 218
+++G+ L+FN D C L+ L++++ EP+
Sbjct: 319 ETTGVRCLTFNPDGKSVLCGLQESLKIFSWEPI 351
>At5g05150.1 68418.m00547 transport protein-related contains 2 WD-40
repeats (PF00400); similar to transport protein Gsa12p
(GI:18307769) [Pichia pastoris]
Length = 374
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 317 PYSLLLLDDQQRAFKAEVVFKSPIRALRARKDKVAVVL 430
P + + DD + +E+ FKS + A++ ++ V VVL
Sbjct: 101 PNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVL 138
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 303 TTSSQLVRNTISHRDTCPAPLCCNAPSRPGAPHYRHAGQSSDSM 172
T S L R T + ++ P P+ +PS P P H ++S ++
Sbjct: 96 TASEHLKRGTCPNFNSLPKPISTISPSPPPPPSSSHRKRNSSAV 139
>At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 304
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 14 MCVLNY*SENVQSENIQNIKSMFMIISRRRR 106
+C+L +N+ SE +QN+KS+ ++S R+R
Sbjct: 122 LCLLQMKDDNM-SEYLQNLKSIDSLVSTRKR 151
>At4g35920.3 68417.m05107 expressed protein contains Pfam profile
PF04749: Protein of unknown function, DUF614; isoform
contains AT-acceptor splice site at intron 8
Length = 421
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 35 SENVQSENIQNIKSMFMIISRRRRHGAPEEQWHNEL 142
S S + N+ S ++SRR E+WH +L
Sbjct: 269 STRAASRSTSNVSSGHDLLSRRASQAQHHEEWHTDL 304
>At4g35920.2 68417.m05106 expressed protein contains Pfam profile
PF04749: Protein of unknown function, DUF614; isoform
contains AT-acceptor splice site at intron 8
Length = 421
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 35 SENVQSENIQNIKSMFMIISRRRRHGAPEEQWHNEL 142
S S + N+ S ++SRR E+WH +L
Sbjct: 269 STRAASRSTSNVSSGHDLLSRRASQAQHHEEWHTDL 304
>At4g35920.1 68417.m05105 expressed protein contains Pfam profile
PF04749: Protein of unknown function, DUF614; isoform
contains AT-acceptor splice site at intron 8
Length = 421
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 35 SENVQSENIQNIKSMFMIISRRRRHGAPEEQWHNEL 142
S S + N+ S ++SRR E+WH +L
Sbjct: 269 STRAASRSTSNVSSGHDLLSRRASQAQHHEEWHTDL 304
>At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to
cDNA homeobox protein (BEL1) GI:28202124
Length = 611
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 35 SENVQSENIQNIKSMFMII-SRRRRHGAPEEQWHNELEFQSG 157
+++ Q +N+Q+ + M M++ S + + Q HN +FQ G
Sbjct: 154 NKSTQHQNLQHTQMMMMMMNSHHQNNNNNNHQHHNHHQFQIG 195
>At2g34930.1 68415.m04288 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.1 [Lycopersicon
pimpinellifolium] gi|1184075|gb|AAC15779
Length = 905
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 429 RTTATLSFLARNARIGDLKTTSALKARCWSSSRRRLYGFRAFTTSSQLVRNTISHRDTC- 253
R + +SFL + +L SA +C S+ R+ L FRA T + S D C
Sbjct: 6 RPSFFISFLILILLLKNLNYGSAASPKCISTERQALLTFRAALTDLSSRLFSWSGPDCCN 65
Query: 252 -PAPLC 238
P LC
Sbjct: 66 WPGVLC 71
>At1g74720.1 68414.m08658 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1081
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 425 QRPPYPSWPATLVSAT*RPPQP*RHVAGRPAGG 327
QRPP P P + PP+ + GRP GG
Sbjct: 258 QRPPSPPPPPSAGEVHYYPPEVRKMQVGRPPGG 290
>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
alpha glucosidase II beta subunit from GI:2104691 [Mus
musculus]
Length = 647
Score = 26.2 bits (55), Expect = 9.6
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 93 HGVEDMARRKSSGITSLSFNQDQGCFTCCLKTGLRVYNVEPLV--EKAHYSKEELGRCPY 266
H VE SS +S ++ Q + + V VE V +K SKEELGR
Sbjct: 300 HVVERKEESTSSEDSSSPTDESQNDGSAEKEESDEVKKVEDFVTEKKEELSKEELGRLVA 359
Query: 267 ARW 275
+RW
Sbjct: 360 SRW 362
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,891,067
Number of Sequences: 28952
Number of extensions: 219161
Number of successful extensions: 698
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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