Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0526
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.9  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   3.4  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.5  

>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -1

Query: 232 IMTKFSKKNQQNTVTVPIQAKFEKTKVK*HYYFFT*SRMRSKNRIKIKTRLDLFKVNKS 56
           ++  F      +T+T  IQAK+   K+K      + +R+  KNR+    R   +++N++
Sbjct: 428 VLESFPAAVSFSTITNTIQAKYSNRKIKNSNITRSLNRLVRKNRVLRDARGSSYELNRT 486


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 7   NYLKYQNFNISLWNLVYFC 63
           +YL+Y N   S+W  V FC
Sbjct: 613 DYLEYPNLEFSIWGNVKFC 631


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 161 FFKFCLNWNCDSILLIFFRKLCHYLCEIILGYFFFSCSCLGQNF 292
           FF  CL     S  +I+F    + LCEI+      SCS   Q F
Sbjct: 84  FFSMCLR----SCTIIYFSMNPYMLCEILNARNVISCSLNTQKF 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,446
Number of Sequences: 5004
Number of extensions: 51346
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)