BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0526 (694 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 1.9 SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 27 3.4 SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.5 >SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Phf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 538 Score = 27.5 bits (58), Expect = 1.9 Identities = 15/59 (25%), Positives = 30/59 (50%) Frame = -1 Query: 232 IMTKFSKKNQQNTVTVPIQAKFEKTKVK*HYYFFT*SRMRSKNRIKIKTRLDLFKVNKS 56 ++ F +T+T IQAK+ K+K + +R+ KNR+ R +++N++ Sbjct: 428 VLESFPAAVSFSTITNTIQAKYSNRKIKNSNITRSLNRLVRKNRVLRDARGSSYELNRT 486 >SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1004 Score = 26.6 bits (56), Expect = 3.4 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +1 Query: 7 NYLKYQNFNISLWNLVYFC 63 +YL+Y N S+W V FC Sbjct: 613 DYLEYPNLEFSIWGNVKFC 631 >SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 185 Score = 26.2 bits (55), Expect = 4.5 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +2 Query: 161 FFKFCLNWNCDSILLIFFRKLCHYLCEIILGYFFFSCSCLGQNF 292 FF CL S +I+F + LCEI+ SCS Q F Sbjct: 84 FFSMCLR----SCTIIYFSMNPYMLCEILNARNVISCSLNTQKF 123 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,571,446 Number of Sequences: 5004 Number of extensions: 51346 Number of successful extensions: 74 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 74 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 321951680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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