Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0526
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    33   0.19 
Z99283-7|CAB16537.2|  985|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z92782-14|CAI46605.1|  985|Caenorhabditis elegans Hypothetical p...    27   9.6  

>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 21/93 (22%), Positives = 50/93 (53%)
 Frame = +3

Query: 213 LENFVIIYVKLF*AISFSPAVVWGRILPYNRNIFLHKICFNQINNVVIT*FTNIFAMLIS 392
           L+NF +I + L+  + F+  +++  +LP+   I+ +K+   +   ++I   TN F  ++ 
Sbjct: 15  LKNFDLILIGLYGLLFFACIIIYTVVLPF--YIYANKVNHERDKEILIYPITNHFYKMVI 72

Query: 393 I*TSLVVSACKFAILYFIEMVNSNSCTKIIYIL 491
           +   + +S C F + ++  +  S+S   I +I+
Sbjct: 73  VYYLIFISTC-FGVFFYPYL--SDSIVLISFII 102


>Z99283-7|CAB16537.2|  985|Caenorhabditis elegans Hypothetical
           protein Y70C5C.1 protein.
          Length = 985

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 684 KSKNLSCHAVFFFKSSKCKRYSLTFLTDVASLLS*LEK 571
           K K LSC    F+   +C++Y+ T + +   LL  ++K
Sbjct: 863 KPKTLSCRFKKFWDEIECRQYNFTRIEEDVELLKTIKK 900


>Z92782-14|CAI46605.1|  985|Caenorhabditis elegans Hypothetical
           protein Y70C5C.1 protein.
          Length = 985

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 684 KSKNLSCHAVFFFKSSKCKRYSLTFLTDVASLLS*LEK 571
           K K LSC    F+   +C++Y+ T + +   LL  ++K
Sbjct: 863 KPKTLSCRFKKFWDEIECRQYNFTRIEEDVELLKTIKK 900


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,978,877
Number of Sequences: 27780
Number of extensions: 285349
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)