BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0525 (752 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.54 SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 28 1.6 SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 2.9 SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 27 2.9 SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.8 SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 27 3.8 SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 26 5.0 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.0 SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 5.0 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.6 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.8 SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.8 SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 8.8 SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 8.8 >SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1236 Score = 29.5 bits (63), Expect = 0.54 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -1 Query: 686 ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGS--DTASANVWRRTLSPPTVTSSVE 513 +++ S T ++ S + P + S + T + GS D+A+++ W S +TSSV Sbjct: 883 SSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSVA 942 Query: 512 RS 507 S Sbjct: 943 AS 944 >SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 27.9 bits (59), Expect = 1.6 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +2 Query: 281 YLDAQ-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 385 Y DA Y+ +++G+ + + + DTGS WV +K Sbjct: 70 YTDAGGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105 >SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 297 Score = 27.1 bits (57), Expect = 2.9 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Frame = -1 Query: 656 WSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRSRTVS 477 W+ LK++ S + +SP + + +++ S + ++GC S Sbjct: 210 WTEHAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCS--TE 267 Query: 476 RTGCHSRRTSWTCGCR--TCCAANKRCWCS 393 +T C S+ C +CC+ K C+ Sbjct: 268 KTSCCSQEKKSCCTSEKPSCCSNGKSTVCA 297 >SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 293 Score = 27.1 bits (57), Expect = 2.9 Identities = 19/65 (29%), Positives = 28/65 (43%) Frame = -1 Query: 626 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRSRTVSRTGCHSRRTS 447 PR+ A++K + S TAS ++SP + SSV S SR + H + S Sbjct: 96 PRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKDHWKPDS 155 Query: 446 WTCGC 432 C Sbjct: 156 DVSVC 160 >SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|Schizosaccharomyces pombe|chr 3|||Manual Length = 551 Score = 26.6 bits (56), Expect = 3.8 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -1 Query: 668 TGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSS 519 TG+TWST + +NL+A+K S SAN PP S+ Sbjct: 267 TGLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSN 316 >SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 413 Score = 26.6 bits (56), Expect = 3.8 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 388 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 284 +FG + E GG G +R RR +D H +S++ Sbjct: 95 MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129 >SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces pombe|chr 1|||Manual Length = 501 Score = 26.2 bits (55), Expect = 5.0 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +3 Query: 102 MGKISLFFLALIASSVMALYRVPLHRMKTARTH 200 MGK+S+ + A IAS+ + ++ P +R H Sbjct: 1 MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 26.2 bits (55), Expect = 5.0 Identities = 21/75 (28%), Positives = 33/75 (44%) Frame = -1 Query: 707 TGCTSP*ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTV 528 T TS +T L++ T ST++ A S++ T + + +SAN T + T Sbjct: 381 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTP 440 Query: 527 TSSVERSRRGCRSRT 483 SSV + S T Sbjct: 441 LSSVNSTTATSASST 455 >SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pombe|chr 2|||Manual Length = 827 Score = 26.2 bits (55), Expect = 5.0 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -3 Query: 603 GHEGKPGLRHGLGERL 556 G EGKPG+ G+GE L Sbjct: 72 GTEGKPGVSRGVGEEL 87 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 25.8 bits (54), Expect = 6.6 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = -1 Query: 707 TGCTSP*ATMLSNTGVTW--STAIVLKAIPRIPS--NLAATKASPGSDTASANVWRRTLS 540 T TSP +T S+T V+W +T I + ++ S ++ T + S T +++ T S Sbjct: 602 TPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSS 661 Query: 539 PPTVTSS 519 T TSS Sbjct: 662 SSTATSS 668 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 25.4 bits (53), Expect = 8.8 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +1 Query: 64 ISKSPSCGF*KQQWERYLYF 123 + K P CGF W +L+F Sbjct: 644 VGKGPGCGFWAPSWRVWLFF 663 >SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 1405 Score = 25.4 bits (53), Expect = 8.8 Identities = 18/67 (26%), Positives = 30/67 (44%) Frame = -1 Query: 644 IVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRSRTVSRTGC 465 I + R PSN + P + +ASAN + + P + + VER RR + + Sbjct: 860 ICFTTVDRSPSNSDSDDQIPDTPSASAN---QGIFPRLIANLVER-RRQIKGLLKDNSAT 915 Query: 464 HSRRTSW 444 ++R W Sbjct: 916 PTQRLQW 922 >SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 612 Score = 25.4 bits (53), Expect = 8.8 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +2 Query: 209 GWH*TGAVEIKIRCDCPSPEPLS 277 GW TG KIRCD S +PLS Sbjct: 420 GWKYTGEQLFKIRCD--SKQPLS 440 >SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr 2|||Manual Length = 807 Score = 25.4 bits (53), Expect = 8.8 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 539 PPTVTSSVERSRRGCRSRTVSR 474 PP++ SS E RR C + V+R Sbjct: 416 PPSIASSPESKRRKCPKKFVAR 437 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,035,366 Number of Sequences: 5004 Number of extensions: 62826 Number of successful extensions: 173 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 172 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 359287726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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