Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0525
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.54
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 28 1.6
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 2.9
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 27 2.9
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.8
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 27 3.8
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 26 5.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.0
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 5.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.8
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.8
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 8.8
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 8.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 686 ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGS--DTASANVWRRTLSPPTVTSSVE 513
+++ S T ++ S + P + S + T + GS D+A+++ W S +TSSV
Sbjct: 883 SSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSVA 942
Query: 512 RS 507
S
Sbjct: 943 AS 944
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 281 YLDAQ-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 385
Y DA Y+ +++G+ + + + DTGS WV +K
Sbjct: 70 YTDAGGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -1
Query: 656 WSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRSRTVS 477
W+ LK++ S + +SP + + +++ S + ++GC S
Sbjct: 210 WTEHAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCS--TE 267
Query: 476 RTGCHSRRTSWTCGCR--TCCAANKRCWCS 393
+T C S+ C +CC+ K C+
Sbjct: 268 KTSCCSQEKKSCCTSEKPSCCSNGKSTVCA 297
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -1
Query: 626 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRSRTVSRTGCHSRRTS 447
PR+ A++K + S TAS ++SP + SSV S SR + H + S
Sbjct: 96 PRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKDHWKPDS 155
Query: 446 WTCGC 432
C
Sbjct: 156 DVSVC 160
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 668 TGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSS 519
TG+TWST + +NL+A+K S SAN PP S+
Sbjct: 267 TGLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSN 316
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 388 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 284
+FG + E GG G +R RR +D H +S++
Sbjct: 95 MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 102 MGKISLFFLALIASSVMALYRVPLHRMKTARTH 200
MGK+S+ + A IAS+ + ++ P +R H
Sbjct: 1 MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 5.0
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -1
Query: 707 TGCTSP*ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTV 528
T TS +T L++ T ST++ A S++ T + + +SAN T + T
Sbjct: 381 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTP 440
Query: 527 TSSVERSRRGCRSRT 483
SSV + S T
Sbjct: 441 LSSVNSTTATSASST 455
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 603 GHEGKPGLRHGLGERL 556
G EGKPG+ G+GE L
Sbjct: 72 GTEGKPGVSRGVGEEL 87
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -1
Query: 707 TGCTSP*ATMLSNTGVTW--STAIVLKAIPRIPS--NLAATKASPGSDTASANVWRRTLS 540
T TSP +T S+T V+W +T I + ++ S ++ T + S T +++ T S
Sbjct: 602 TPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSS 661
Query: 539 PPTVTSS 519
T TSS
Sbjct: 662 SSTATSS 668
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 64 ISKSPSCGF*KQQWERYLYF 123
+ K P CGF W +L+F
Sbjct: 644 VGKGPGCGFWAPSWRVWLFF 663
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -1
Query: 644 IVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRSRTVSRTGC 465
I + R PSN + P + +ASAN + + P + + VER RR + +
Sbjct: 860 ICFTTVDRSPSNSDSDDQIPDTPSASAN---QGIFPRLIANLVER-RRQIKGLLKDNSAT 915
Query: 464 HSRRTSW 444
++R W
Sbjct: 916 PTQRLQW 922
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 209 GWH*TGAVEIKIRCDCPSPEPLS 277
GW TG KIRCD S +PLS
Sbjct: 420 GWKYTGEQLFKIRCD--SKQPLS 440
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 539 PPTVTSSVERSRRGCRSRTVSR 474
PP++ SS E RR C + V+R
Sbjct: 416 PPSIASSPESKRRKCPKKFVAR 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,366
Number of Sequences: 5004
Number of extensions: 62826
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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