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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0525
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                        140   1e-33
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)                    40   0.002
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    33   0.19 
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.57 
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.57 
SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)                        32   0.57 
SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7)                     31   0.76 
SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)                 29   3.1  
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   29   4.1  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   4.1  
SB_21150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   9.4  
SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)                 28   9.4  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score =  140 bits (339), Expect = 1e-33
 Identities = 61/76 (80%), Positives = 67/76 (88%)
 Frame = +2

Query: 263 PEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNKYDSRK 442
           PEPL NY+DAQYYG I+IGTPPQ F VVFDTGSSNLWVPSKKC +TNIACLLH+KYDS K
Sbjct: 32  PEPLINYMDAQYYGEITIGTPPQKFTVVFDTGSSNLWVPSKKCSWTNIACLLHDKYDSTK 91

Query: 443 SKTYVANGTQFAIQYG 490
           S TY  NGT+FAI+YG
Sbjct: 92  SSTYKKNGTEFAIRYG 107



 Score =  103 bits (246), Expect = 2e-22
 Identities = 52/73 (71%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
 Frame = +1

Query: 511 LSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNMVAQ 690
           LS D V+VGG+ V+ QTFAEA+ EPGL FVAAKFDGILGM FS+I+VD V PVF +MV Q
Sbjct: 115 LSIDTVSVGGIDVKGQTFAEALKEPGLTFVAAKFDGILGMGFSSISVDQVVPVFYDMVLQ 174

Query: 691 GLV-QPVFSFYLN 726
            LV  PVFSFYLN
Sbjct: 175 KLVPAPVFSFYLN 187


>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
          Length = 721

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +1

Query: 613 DGILGMAFSTIAVDHVTPVFDNMVAQGLVQPVFSFYL 723
           +GILG+A+ ++A D VTP++D +V  G V  VF+  L
Sbjct: 355 EGILGLAYRSLATDGVTPLYDQLVLDGKVPNVFTLGL 391


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 296 YYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHY 397
           YY   ++G+PPQ   V+ DTGSSN  V +    Y
Sbjct: 40  YYIASNLGSPPQRINVLVDTGSSNFAVAASAHPY 73


>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +3

Query: 525 CHRGRAQGAAPDVRRGRVGARACLRGRQVRRDPRDGLQHYRSGPCDPGVRQHGGSGTRAA 704
           C R R+ G +P       G  AC R R     P D ++ Y + PCD  VR +G S     
Sbjct: 438 CDRVRSHGNSPCDCVRLYGNSACDRVRLHGNSPCDRVRLYGNSPCD-RVRLYGNSACDRV 496

Query: 705 RL 710
           RL
Sbjct: 497 RL 498


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = -1

Query: 626 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRSRTVSRTGCHSRRTS 447
           P + S++ +      + T  +    RT +PPT TSS   SR   R    +   C +R++ 
Sbjct: 331 PGMISSVGSIAPPSPTSTPRSRTGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTRKSR 390

Query: 446 WTCG---CRTCCAANKRCWCSGT 387
              G    +T CA  +R    GT
Sbjct: 391 EQNGDTKTKTKCATTRRVSGHGT 413


>SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)
          Length = 583

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 27/96 (28%), Positives = 39/96 (40%)
 Frame = -3

Query: 708 DGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPAHG 529
           + L  S SH       H     SA+G    P  L G   +P L   +   L+     A  
Sbjct: 436 EDLTRSSSHSSFRVLSHSSSSGSADGIMSHPEGLLGVPQRPTLGPDITNVLSLAGMVAES 495

Query: 528 DIISGEEPERLPEPYCIANWVPFATYVLDLRLSYLL 421
            I++     +L     IAN++PF   VL  RL Y++
Sbjct: 496 SIMTESGVSKLRNDNFIANFLPFYVIVLWQRLEYII 531


>SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7)
          Length = 333

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 520 DDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVF 672
           D  T GGLK  R T   +VS  GL  V    DG L +    +  +++ P +
Sbjct: 74  DSHTGGGLKGIRITANVSVSVYGLGLVDQSSDGFLALPVGLLGTEYIVPTY 124


>SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 293 EHQDNLT--MVRVKGSHIVF*SQQLQFSAN 210
           EH  NLT  M R KG  IVF +++LQF  N
Sbjct: 183 EHDRNLTDLMERAKGKGIVFNAEKLQFKCN 212


>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1356

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 675 VEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPA 535
           V + GH+V  D     PE    LG   G+   R  +GE   P  + A
Sbjct: 625 VPYLGHIVSADGVATDPEKTKALGSGRGQKSTRKVIGELWTPECQAA 671


>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
          Length = 221

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/71 (35%), Positives = 32/71 (45%)
 Frame = +3

Query: 531 RGRAQGAAPDVRRGRVGARACLRGRQVRRDPRDGLQHYRSGPCDPGVRQHGGSGTRAARL 710
           RGR +G A    RG VGAR            R G +  R G   PG  + G +G R    
Sbjct: 95  RGRGRGMARGPGRGMVGARG-----------RAGFRGNRGGFTSPG--RGGAAGFRGRGR 141

Query: 711 LVLSQQGPRGR 743
             +++ GPRGR
Sbjct: 142 GGMTRGGPRGR 152


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 717  EREDGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVEL 607
            E +D L    S+  VE RG +VH DS +   +D VEL
Sbjct: 1019 EADDCLKPLKSYTAVESRGQIVHPDSNDEKEKDLVEL 1055


>SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 720 IEREDGLHESLSHHVVEHRGHMVHCDSAEGHPED 619
           ++ E  L+    H+  +H  H V  DS  GHP D
Sbjct: 84  LQGERNLNARQKHYEAKHPPHPVDIDSKHGHPPD 117


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 639  AEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPAHGDIISGEEPER-LPEPYCIANWVP 463
            ++G  +DP E GG  GKP  R   G R +   + +  D     EP+  +PEP    N+VP
Sbjct: 1052 SQGRTKDPPE-GGIRGKPSSR--FGSRTS---QSSWRDERPKPEPKPWVPEPVSRVNYVP 1105

Query: 462  FATYVLDL 439
               ++ +L
Sbjct: 1106 IPHFISEL 1113


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
 Frame = -1

Query: 635  KAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSR---RGC---RS----- 489
            K  P+  S+    K SP   T+++    R    P +T S + SR   R C   RS     
Sbjct: 1808 KTKPKQDSSKKKRKRSPSPATSASREGTRKAKRPRLTDSAKSSRSALRNCWEGRSVRASS 1867

Query: 488  --RTVSRTGCHSRRTSW 444
              R +++ GC +RR SW
Sbjct: 1868 LLRQLAKGGCAARRLSW 1884


>SB_21150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 553 RQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPV 669
           R  FA   SE G+A    + D +L  AFST  +  +  V
Sbjct: 42  RTRFAMLSSEAGIALAYVRLDPVLAFAFSTATLGTIVDV 80


>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = -1

Query: 605 AATKASPGSDTASANVWRRTLSPPTVTSSVERSRRG-CRSRTVSRTGCHSRRTSWTCGCR 429
           A TK     D A A+    T      TS+V + + G C  R V   G         CG  
Sbjct: 533 AQTKCQYDGDCAGADKCCNTQCGKICTSAVLKEKTGFCPKRRVDHVGVCVNY----CGTD 588

Query: 428 TCCAANKRCWCSG 390
             CA +K+C  +G
Sbjct: 589 GDCAGDKKCCSNG 601


>SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -3

Query: 729 PVEIEREDGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAP 550
           PV    ++G H+++   ++ +RGH+   D+ +  P       GHE    L  G G ++ P
Sbjct: 547 PVHRAAKNG-HDAVLELLIAYRGHITSMDNWQYTPLHRAAENGHESTLKLLLGAGCKIDP 605


>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
          Length = 527

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 696 ESLSHHVVEHRGHMVHCDSAEGHP--EDPVELGGHEGK 589
           ES  H+  E R H  +     GHP   + + LG +EGK
Sbjct: 355 ESFIHYKRETRSHQYYDSEKRGHPMLVESLSLGEYEGK 392


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,381,743
Number of Sequences: 59808
Number of extensions: 535424
Number of successful extensions: 2050
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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