Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0525
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36362| Best HMM Match : Asp (HMM E-Value=0) 140 1e-33
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07) 40 0.002
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09) 33 0.19
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_794| Best HMM Match : C2 (HMM E-Value=1e-23) 32 0.57
SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7) 31 0.76
SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 29 3.1
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) 29 4.1
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 4.1
SB_21150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 9.4
SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08) 28 9.4
>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
Length = 326
Score = 140 bits (339), Expect = 1e-33
Identities = 61/76 (80%), Positives = 67/76 (88%)
Frame = +2
Query: 263 PEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNKYDSRK 442
PEPL NY+DAQYYG I+IGTPPQ F VVFDTGSSNLWVPSKKC +TNIACLLH+KYDS K
Sbjct: 32 PEPLINYMDAQYYGEITIGTPPQKFTVVFDTGSSNLWVPSKKCSWTNIACLLHDKYDSTK 91
Query: 443 SKTYVANGTQFAIQYG 490
S TY NGT+FAI+YG
Sbjct: 92 SSTYKKNGTEFAIRYG 107
Score = 103 bits (246), Expect = 2e-22
Identities = 52/73 (71%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Frame = +1
Query: 511 LSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNMVAQ 690
LS D V+VGG+ V+ QTFAEA+ EPGL FVAAKFDGILGM FS+I+VD V PVF +MV Q
Sbjct: 115 LSIDTVSVGGIDVKGQTFAEALKEPGLTFVAAKFDGILGMGFSSISVDQVVPVFYDMVLQ 174
Query: 691 GLV-QPVFSFYLN 726
LV PVFSFYLN
Sbjct: 175 KLVPAPVFSFYLN 187
>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
Length = 721
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 613 DGILGMAFSTIAVDHVTPVFDNMVAQGLVQPVFSFYL 723
+GILG+A+ ++A D VTP++D +V G V VF+ L
Sbjct: 355 EGILGLAYRSLATDGVTPLYDQLVLDGKVPNVFTLGL 391
>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
Length = 278
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 296 YYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHY 397
YY ++G+PPQ V+ DTGSSN V + Y
Sbjct: 40 YYIASNLGSPPQRINVLVDTGSSNFAVAASAHPY 73
>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +3
Query: 525 CHRGRAQGAAPDVRRGRVGARACLRGRQVRRDPRDGLQHYRSGPCDPGVRQHGGSGTRAA 704
C R R+ G +P G AC R R P D ++ Y + PCD VR +G S
Sbjct: 438 CDRVRSHGNSPCDCVRLYGNSACDRVRLHGNSPCDRVRLYGNSPCD-RVRLYGNSACDRV 496
Query: 705 RL 710
RL
Sbjct: 497 RL 498
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 31.9 bits (69), Expect = 0.57
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -1
Query: 626 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRSRTVSRTGCHSRRTS 447
P + S++ + + T + RT +PPT TSS SR R + C +R++
Sbjct: 331 PGMISSVGSIAPPSPTSTPRSRTGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTRKSR 390
Query: 446 WTCG---CRTCCAANKRCWCSGT 387
G +T CA +R GT
Sbjct: 391 EQNGDTKTKTKCATTRRVSGHGT 413
>SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)
Length = 583
Score = 31.9 bits (69), Expect = 0.57
Identities = 27/96 (28%), Positives = 39/96 (40%)
Frame = -3
Query: 708 DGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPAHG 529
+ L S SH H SA+G P L G +P L + L+ A
Sbjct: 436 EDLTRSSSHSSFRVLSHSSSSGSADGIMSHPEGLLGVPQRPTLGPDITNVLSLAGMVAES 495
Query: 528 DIISGEEPERLPEPYCIANWVPFATYVLDLRLSYLL 421
I++ +L IAN++PF VL RL Y++
Sbjct: 496 SIMTESGVSKLRNDNFIANFLPFYVIVLWQRLEYII 531
>SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7)
Length = 333
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 520 DDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVF 672
D T GGLK R T +VS GL V DG L + + +++ P +
Sbjct: 74 DSHTGGGLKGIRITANVSVSVYGLGLVDQSSDGFLALPVGLLGTEYIVPTY 124
>SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -1
Query: 293 EHQDNLT--MVRVKGSHIVF*SQQLQFSAN 210
EH NLT M R KG IVF +++LQF N
Sbjct: 183 EHDRNLTDLMERAKGKGIVFNAEKLQFKCN 212
>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1356
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 675 VEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPA 535
V + GH+V D PE LG G+ R +GE P + A
Sbjct: 625 VPYLGHIVSADGVATDPEKTKALGSGRGQKSTRKVIGELWTPECQAA 671
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/71 (35%), Positives = 32/71 (45%)
Frame = +3
Query: 531 RGRAQGAAPDVRRGRVGARACLRGRQVRRDPRDGLQHYRSGPCDPGVRQHGGSGTRAARL 710
RGR +G A RG VGAR R G + R G PG + G +G R
Sbjct: 95 RGRGRGMARGPGRGMVGARG-----------RAGFRGNRGGFTSPG--RGGAAGFRGRGR 141
Query: 711 LVLSQQGPRGR 743
+++ GPRGR
Sbjct: 142 GGMTRGGPRGR 152
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 717 EREDGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVEL 607
E +D L S+ VE RG +VH DS + +D VEL
Sbjct: 1019 EADDCLKPLKSYTAVESRGQIVHPDSNDEKEKDLVEL 1055
>SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 720 IEREDGLHESLSHHVVEHRGHMVHCDSAEGHPED 619
++ E L+ H+ +H H V DS GHP D
Sbjct: 84 LQGERNLNARQKHYEAKHPPHPVDIDSKHGHPPD 117
>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
Length = 1287
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 639 AEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPAHGDIISGEEPER-LPEPYCIANWVP 463
++G +DP E GG GKP R G R + + + D EP+ +PEP N+VP
Sbjct: 1052 SQGRTKDPPE-GGIRGKPSSR--FGSRTS---QSSWRDERPKPEPKPWVPEPVSRVNYVP 1105
Query: 462 FATYVLDL 439
++ +L
Sbjct: 1106 IPHFISEL 1113
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Frame = -1
Query: 635 KAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSR---RGC---RS----- 489
K P+ S+ K SP T+++ R P +T S + SR R C RS
Sbjct: 1808 KTKPKQDSSKKKRKRSPSPATSASREGTRKAKRPRLTDSAKSSRSALRNCWEGRSVRASS 1867
Query: 488 --RTVSRTGCHSRRTSW 444
R +++ GC +RR SW
Sbjct: 1868 LLRQLAKGGCAARRLSW 1884
>SB_21150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 553 RQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPV 669
R FA SE G+A + D +L AFST + + V
Sbjct: 42 RTRFAMLSSEAGIALAYVRLDPVLAFAFSTATLGTIVDV 80
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = -1
Query: 605 AATKASPGSDTASANVWRRTLSPPTVTSSVERSRRG-CRSRTVSRTGCHSRRTSWTCGCR 429
A TK D A A+ T TS+V + + G C R V G CG
Sbjct: 533 AQTKCQYDGDCAGADKCCNTQCGKICTSAVLKEKTGFCPKRRVDHVGVCVNY----CGTD 588
Query: 428 TCCAANKRCWCSG 390
CA +K+C +G
Sbjct: 589 GDCAGDKKCCSNG 601
>SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -3
Query: 729 PVEIEREDGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAP 550
PV ++G H+++ ++ +RGH+ D+ + P GHE L G G ++ P
Sbjct: 547 PVHRAAKNG-HDAVLELLIAYRGHITSMDNWQYTPLHRAAENGHESTLKLLLGAGCKIDP 605
>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
Length = 527
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 696 ESLSHHVVEHRGHMVHCDSAEGHP--EDPVELGGHEGK 589
ES H+ E R H + GHP + + LG +EGK
Sbjct: 355 ESFIHYKRETRSHQYYDSEKRGHPMLVESLSLGEYEGK 392
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,381,743
Number of Sequences: 59808
Number of extensions: 535424
Number of successful extensions: 2050
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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