BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0525 (752 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_36362| Best HMM Match : Asp (HMM E-Value=0) 140 1e-33 SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07) 40 0.002 SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09) 33 0.19 SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57 SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57 SB_794| Best HMM Match : C2 (HMM E-Value=1e-23) 32 0.57 SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7) 31 0.76 SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8 SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3 SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 29 3.1 SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) 29 4.1 SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 4.1 SB_21150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4 SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 9.4 SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4 SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08) 28 9.4 >SB_36362| Best HMM Match : Asp (HMM E-Value=0) Length = 326 Score = 140 bits (339), Expect = 1e-33 Identities = 61/76 (80%), Positives = 67/76 (88%) Frame = +2 Query: 263 PEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNKYDSRK 442 PEPL NY+DAQYYG I+IGTPPQ F VVFDTGSSNLWVPSKKC +TNIACLLH+KYDS K Sbjct: 32 PEPLINYMDAQYYGEITIGTPPQKFTVVFDTGSSNLWVPSKKCSWTNIACLLHDKYDSTK 91 Query: 443 SKTYVANGTQFAIQYG 490 S TY NGT+FAI+YG Sbjct: 92 SSTYKKNGTEFAIRYG 107 Score = 103 bits (246), Expect = 2e-22 Identities = 52/73 (71%), Positives = 59/73 (80%), Gaps = 1/73 (1%) Frame = +1 Query: 511 LSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNMVAQ 690 LS D V+VGG+ V+ QTFAEA+ EPGL FVAAKFDGILGM FS+I+VD V PVF +MV Q Sbjct: 115 LSIDTVSVGGIDVKGQTFAEALKEPGLTFVAAKFDGILGMGFSSISVDQVVPVFYDMVLQ 174 Query: 691 GLV-QPVFSFYLN 726 LV PVFSFYLN Sbjct: 175 KLVPAPVFSFYLN 187 >SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07) Length = 721 Score = 39.9 bits (89), Expect = 0.002 Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = +1 Query: 613 DGILGMAFSTIAVDHVTPVFDNMVAQGLVQPVFSFYL 723 +GILG+A+ ++A D VTP++D +V G V VF+ L Sbjct: 355 EGILGLAYRSLATDGVTPLYDQLVLDGKVPNVFTLGL 391 >SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09) Length = 278 Score = 33.5 bits (73), Expect = 0.19 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 296 YYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHY 397 YY ++G+PPQ V+ DTGSSN V + Y Sbjct: 40 YYIASNLGSPPQRINVLVDTGSSNFAVAASAHPY 73 >SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 673 Score = 31.9 bits (69), Expect = 0.57 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = +3 Query: 525 CHRGRAQGAAPDVRRGRVGARACLRGRQVRRDPRDGLQHYRSGPCDPGVRQHGGSGTRAA 704 C R R+ G +P G AC R R P D ++ Y + PCD VR +G S Sbjct: 438 CDRVRSHGNSPCDCVRLYGNSACDRVRLHGNSPCDRVRLYGNSPCD-RVRLYGNSACDRV 496 Query: 705 RL 710 RL Sbjct: 497 RL 498 >SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 548 Score = 31.9 bits (69), Expect = 0.57 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Frame = -1 Query: 626 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRSRTVSRTGCHSRRTS 447 P + S++ + + T + RT +PPT TSS SR R + C +R++ Sbjct: 331 PGMISSVGSIAPPSPTSTPRSRTGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTRKSR 390 Query: 446 WTCG---CRTCCAANKRCWCSGT 387 G +T CA +R GT Sbjct: 391 EQNGDTKTKTKCATTRRVSGHGT 413 >SB_794| Best HMM Match : C2 (HMM E-Value=1e-23) Length = 583 Score = 31.9 bits (69), Expect = 0.57 Identities = 27/96 (28%), Positives = 39/96 (40%) Frame = -3 Query: 708 DGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPAHG 529 + L S SH H SA+G P L G +P L + L+ A Sbjct: 436 EDLTRSSSHSSFRVLSHSSSSGSADGIMSHPEGLLGVPQRPTLGPDITNVLSLAGMVAES 495 Query: 528 DIISGEEPERLPEPYCIANWVPFATYVLDLRLSYLL 421 I++ +L IAN++PF VL RL Y++ Sbjct: 496 SIMTESGVSKLRNDNFIANFLPFYVIVLWQRLEYII 531 >SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7) Length = 333 Score = 31.5 bits (68), Expect = 0.76 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +1 Query: 520 DDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVF 672 D T GGLK R T +VS GL V DG L + + +++ P + Sbjct: 74 DSHTGGGLKGIRITANVSVSVYGLGLVDQSSDGFLALPVGLLGTEYIVPTY 124 >SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 539 Score = 30.3 bits (65), Expect = 1.8 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Frame = -1 Query: 293 EHQDNLT--MVRVKGSHIVF*SQQLQFSAN 210 EH NLT M R KG IVF +++LQF N Sbjct: 183 EHDRNLTDLMERAKGKGIVFNAEKLQFKCN 212 >SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1356 Score = 29.9 bits (64), Expect = 2.3 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = -3 Query: 675 VEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPA 535 V + GH+V D PE LG G+ R +GE P + A Sbjct: 625 VPYLGHIVSADGVATDPEKTKALGSGRGQKSTRKVIGELWTPECQAA 671 >SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) Length = 221 Score = 29.5 bits (63), Expect = 3.1 Identities = 25/71 (35%), Positives = 32/71 (45%) Frame = +3 Query: 531 RGRAQGAAPDVRRGRVGARACLRGRQVRRDPRDGLQHYRSGPCDPGVRQHGGSGTRAARL 710 RGR +G A RG VGAR R G + R G PG + G +G R Sbjct: 95 RGRGRGMARGPGRGMVGARG-----------RAGFRGNRGGFTSPG--RGGAAGFRGRGR 141 Query: 711 LVLSQQGPRGR 743 +++ GPRGR Sbjct: 142 GGMTRGGPRGR 152 >SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1660 Score = 29.5 bits (63), Expect = 3.1 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -3 Query: 717 EREDGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVEL 607 E +D L S+ VE RG +VH DS + +D VEL Sbjct: 1019 EADDCLKPLKSYTAVESRGQIVHPDSNDEKEKDLVEL 1055 >SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 850 Score = 29.1 bits (62), Expect = 4.1 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -3 Query: 720 IEREDGLHESLSHHVVEHRGHMVHCDSAEGHPED 619 ++ E L+ H+ +H H V DS GHP D Sbjct: 84 LQGERNLNARQKHYEAKHPPHPVDIDSKHGHPPD 117 >SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) Length = 1287 Score = 29.1 bits (62), Expect = 4.1 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -3 Query: 639 AEGHPEDPVELGGHEGKPGLRHGLGERLAPHLEPAHGDIISGEEPER-LPEPYCIANWVP 463 ++G +DP E GG GKP R G R + + + D EP+ +PEP N+VP Sbjct: 1052 SQGRTKDPPE-GGIRGKPSSR--FGSRTS---QSSWRDERPKPEPKPWVPEPVSRVNYVP 1105 Query: 462 FATYVLDL 439 ++ +L Sbjct: 1106 IPHFISEL 1113 >SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) Length = 2049 Score = 29.1 bits (62), Expect = 4.1 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 13/77 (16%) Frame = -1 Query: 635 KAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSR---RGC---RS----- 489 K P+ S+ K SP T+++ R P +T S + SR R C RS Sbjct: 1808 KTKPKQDSSKKKRKRSPSPATSASREGTRKAKRPRLTDSAKSSRSALRNCWEGRSVRASS 1867 Query: 488 --RTVSRTGCHSRRTSW 444 R +++ GC +RR SW Sbjct: 1868 LLRQLAKGGCAARRLSW 1884 >SB_21150| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 81 Score = 28.7 bits (61), Expect = 5.4 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +1 Query: 553 RQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPV 669 R FA SE G+A + D +L AFST + + V Sbjct: 42 RTRFAMLSSEAGIALAYVRLDPVLAFAFSTATLGTIVDV 80 >SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) Length = 1120 Score = 27.9 bits (59), Expect = 9.4 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Frame = -1 Query: 605 AATKASPGSDTASANVWRRTLSPPTVTSSVERSRRG-CRSRTVSRTGCHSRRTSWTCGCR 429 A TK D A A+ T TS+V + + G C R V G CG Sbjct: 533 AQTKCQYDGDCAGADKCCNTQCGKICTSAVLKEKTGFCPKRRVDHVGVCVNY----CGTD 588 Query: 428 TCCAANKRCWCSG 390 CA +K+C +G Sbjct: 589 GDCAGDKKCCSNG 601 >SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 787 Score = 27.9 bits (59), Expect = 9.4 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = -3 Query: 729 PVEIEREDGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAP 550 PV ++G H+++ ++ +RGH+ D+ + P GHE L G G ++ P Sbjct: 547 PVHRAAKNG-HDAVLELLIAYRGHITSMDNWQYTPLHRAAENGHESTLKLLLGAGCKIDP 605 >SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08) Length = 527 Score = 27.9 bits (59), Expect = 9.4 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = -3 Query: 696 ESLSHHVVEHRGHMVHCDSAEGHP--EDPVELGGHEGK 589 ES H+ E R H + GHP + + LG +EGK Sbjct: 355 ESFIHYKRETRSHQYYDSEKRGHPMLVESLSLGEYEGK 392 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,381,743 Number of Sequences: 59808 Number of extensions: 535424 Number of successful extensions: 2050 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1856 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2039 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2046258890 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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