Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0525
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.062
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.76 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.76 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.3  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   4.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 0.062
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 623  RIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGCRS 489
            R  S   + KA PGS  A +   ++ LSP  + SS   +  GC S
Sbjct: 886  RPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSNDGGCSS 930


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 440 CGCRTCCAANKRCWCSGTFWKAPRGWRIRCRIPP*TTAAAC 318
           C C+TC +  K C+        P   + + R+PP T    C
Sbjct: 435 CECKTCNSKTKCCFAQDD-GLCPYTLKHKIRVPPGTPIYEC 474


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 663 GHMVHCDSAEGHPEDPV 613
           GHM H  +  GHP  P+
Sbjct: 120 GHMGHTPTPNGHPSTPI 136


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +2

Query: 362 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 463
           SN + P   CH  +IAC    +  K D R  KT   N
Sbjct: 354 SNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEEN 390


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +2

Query: 362 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 463
           SN + P   CH  +IAC    +  K D R  KT   N
Sbjct: 354 SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEEN 390


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +2

Query: 362 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 463
           SN + P   CH  +IAC    +  K D R  KT   N
Sbjct: 65  SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEEN 101


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +3

Query: 84  RLLKTTMGKISLFFLALIASSVMALYRVPLHRMKTA 191
           R+++  +GK+ +  +    + V++LY  P+   + A
Sbjct: 76  RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAA 111


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = -1

Query: 674 SNTGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRGC 495
           S+ G   + A  L +  R  S  +   AS  S TAS+    R+   P+V+ S E    G 
Sbjct: 154 SSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSESDEVDVIGY 213

Query: 494 RSRTVSRTGCHS 459
            S   S T  HS
Sbjct: 214 TSNQ-SDTDDHS 224


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 650 TAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERSRRG 498
           TA  LK    I + +   +ASP S  AS +   +  S  T+T+   +  +G
Sbjct: 717 TAEQLKRTDIIHNYIMRGEASPRSPNASPSPAEQCASTTTITARSPQGSQG 767


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,477
Number of Sequences: 438
Number of extensions: 5005
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)