Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0524
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    31   0.15 
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    28   1.1  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    28   1.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   4.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   5.6  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   5.6  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   7.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   7.4  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   9.8  

>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 434 GVSQKFYIFLQAWRCSREVHVKFQAYDDYIKRALNIPGTKWNIGG-NAPLMAKRFYMEG 607
           G +      LQ W C   + V   A +  + R  NIPG ++ IG  +  L AK + + G
Sbjct: 118 GTANAVITTLQEWGCKNIIFVSVLASEQALTRFSNIPGVEFVIGAVDKSLDAKGYLVPG 176


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 252 TVKEHLLSLENENRVKTGNMQPRVALGYGACHDLFVNATLLLDHRELIGVPEHFD 416
           T K+  +S E  N    G++    AL YG C  +      + DH   I +P++ D
Sbjct: 70  TNKDATVSYELSNNANEGSLDLLGALQYGQCQGIPELVKFIKDHVGQIHMPQYKD 124


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 572 HYHQCSILFLECLKLS*CSHHKLGI*HEPLGCSAMLEEICKTFEKLL 432
           +Y  C +L+L C+ L  CSH +L      L  +A+L +I    E LL
Sbjct: 178 YYRHC-LLYLSCIDLDKCSHTELVERAVDLSVAAILGDIYNFGELLL 223


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 415 TKSQLKRSFSKVLHISSSMALQPRGSCQIPSL 510
           T+ ++K+ F K      S++L  RG+ ++PSL
Sbjct: 610 TEGEVKKLFIKAKIYFESLSLDERGNLKVPSL 641


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/73 (23%), Positives = 36/73 (49%)
 Frame = +3

Query: 3   LLKIRHFYLISTHKLL*TMS*RVPWGQVRILIIHTFHIFSERYLHSRIYHGRFPSEIRYN 182
           +L ++ F  ++ + L  T+   V  G + +L++H  +   + Y  S   H R+ +E   +
Sbjct: 121 MLVLQDFEALTPNLLARTIE-TVEGGGIVVLLLHKLNSLKQLYTMSMDIHSRYRTEAHSD 179

Query: 183 FVIYFSVLRYLLS 221
               F+  R++LS
Sbjct: 180 VTARFNE-RFILS 191


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 7/19 (36%), Positives = 17/19 (89%)
 Frame = +2

Query: 2   FVENSAFLSHINSQIIVNN 58
           ++EN+ FL+H+N++++ +N
Sbjct: 186 YLENNKFLTHLNNEVLHDN 204


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 464 EEICKTFEKLLFSCDFVEMLW 402
           E +C   EK + SC   E+LW
Sbjct: 561 ESVCSILEKAVESCPKAEILW 581


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 417 RRNALVLQLIHDGLTITLHSQRGHGMHRSP 328
           RR    ++ IH G T TL   R H + + P
Sbjct: 316 RRTGASIRTIHRGKTSTLSGNRSHSILQKP 345


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 473 RCSREVHVKFQAYDDYIKRALNIPGTKWNIGGNAPLMAKR 592
           RC     ++++ +D  +   LNIP T  +IG     + KR
Sbjct: 350 RCPFNASMEYELFDKIVNERLNIPSTP-DIGEEGRDLLKR 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,978
Number of Sequences: 5004
Number of extensions: 59243
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)