Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0524
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
 Frame = +3

Query: 189 IYFSVLRYLLSKN*HRRR*IVTVKEHLLSLENENRVKTGN-MQPRVALGYGACHDLFVNA 365
           + F++L     K    R  +++V + +L+LE  +R +     +PR+A+G+ A  DL +NA
Sbjct: 13  VLFAILAAYYYKKATERH-VMSVLDGMLALEKRSRARLQQGPRPRIAIGFEATVDLSLNA 71

Query: 366 TLLLDHRELIGV--PEHF---DEITTKEEFLKSFTYFFKHGAAAERFMSNSKLMMTTS 524
             LL   + IG+  P      D I  +    ++F YF+ H  A+ R+++N +L    S
Sbjct: 72  LELL---KAIGIAPPARMYPHDAIENETALAETFAYFYAHSVASSRYVANKELFRKLS 126


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 168 HWETGHGKCENVNNVH*KCGMYELLVFLLD 79
           H    HGKC+  +    KCG   + +FL D
Sbjct: 534 HGGRKHGKCDRASRYQGKCGSSGMFLFLSD 563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,461
Number of Sequences: 59808
Number of extensions: 423936
Number of successful extensions: 884
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)