Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0524
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.6  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   4.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   4.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 569 YHQCSILFLECLKLS*-CSHHKLGI*HEPLGCSAMLEEICKTFEKLLFSCDFVEML 405
           YH  ++L++  L L   C+       H+   CS M+E +  T + L+F  +  + L
Sbjct: 115 YHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFIWNMTDPL 170


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 259 RNIYCPWKMRIESKQGICNRALLWATVHAMTSL 357
           R I CP   R+ SKQ     A  W  V   T L
Sbjct: 156 RTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVL 188


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 259 RNIYCPWKMRIESKQGICNRALLWATVHAMTSL 357
           R I CP   R+ SKQ     A  W  V   T L
Sbjct: 156 RTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVL 188


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 100 FIHSTFLVNVIYI 138
           FIHS FL+ +I+I
Sbjct: 9   FIHSIFLILIIFI 21


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 100 FIHSTFLVNVIYI 138
           FIHS FL+ +I+I
Sbjct: 9   FIHSIFLILIIFI 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,399
Number of Sequences: 438
Number of extensions: 4584
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)