Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0523
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   5.9  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    25   7.8  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   7.8  

>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 225 NASHCTTPQSPAPRRCSRSVYRDNFPTVRCRYSGESNSRI*R 350
           NAS  TTP +P     S  V    +PT R     +  S I R
Sbjct: 149 NASSYTTPMAPFTASFSNKVSHSAYPTRRLPSQAKKTSAIER 190


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 493 YLSGGDLSLGHYLLSASDHFSASVIGSPEQMLDL 392
           Y+S  DL +  + LS SDH    V   PE M +L
Sbjct: 191 YISADDLRINLWNLSISDHSFNIVDIKPENMEEL 224


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 471 HSVITFYPHLTTFQHPLSEVLSKCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVP 304
           H+  +FY  L+     L   L+  W +FNLYL     P    I   +I + ID++P
Sbjct: 149 HNFQSFYQKLS-LDSSLILALNNFWSFFNLYLT--NSP---HIMNDIINKDIDNIP 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,691
Number of Sequences: 5004
Number of extensions: 62549
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)