Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0523
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44) 30 2.0
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08) 30 2.0
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17) 29 4.7
SB_26667| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-22) 29 4.7
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_39039| Best HMM Match : Drf_FH1 (HMM E-Value=6.4) 28 6.2
SB_36892| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_7791| Best HMM Match : SSDP (HMM E-Value=0.41) 28 6.2
SB_53475| Best HMM Match : PAN (HMM E-Value=0.00029) 28 8.2
SB_17245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_5210| Best HMM Match : Keratin_B2 (HMM E-Value=8) 28 8.2
SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_1366| Best HMM Match : Collagen (HMM E-Value=6.2e-05) 28 8.2
>SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44)
Length = 257
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 113 QLVVSVCVNCLFRGM*NF*PYWRCHYS 33
+LV+ +N L G + PYWRC+Y+
Sbjct: 142 KLVIMSILNSLIPGQTSIRPYWRCYYA 168
>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
Length = 654
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 348 FISGYLIRRYIDSVPWGNCLDKRIWNIF 265
++SG R YI+ VP G+CL ++N++
Sbjct: 318 YLSGRTQRVYIEGVPQGSCLGPLLFNVY 345
>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
Length = 714
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 193 AQVPATGSAHLTPATAPRPKAQHPEDVPDPFIETISPRYAVDIAANQIAG 342
A +PAT S L+P TA + P+ P F++ ISP+ +AA G
Sbjct: 493 ATLPATPSTPLSPNTATPLTSPGPQTTPSQFVK-ISPK---SVAATSATG 538
>SB_26667| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-22)
Length = 326
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 223 SALNQWLAPERDLSNASNAAYADSTGE-FLHGMITASTSLWYLYALIVYFVVCKIFSRTG 47
+ L ++ P + L+N + F +TASTS WYLYA+IV V
Sbjct: 150 TTLLSFIGPSQYLANGGKYVFHSGKYHCFQELRLTASTS-WYLYAIIVPTAVITFCYYKI 208
Query: 46 AATIRL 29
TIRL
Sbjct: 209 FRTIRL 214
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 226 TPATAPRPKAQHPEDVPDPFIETISPRYAVDIAANQIAGYKEKNR 360
TP P PK + PE+ P P SP+ A + + G EK++
Sbjct: 1481 TPVATPEPKKEEPEEKPSP-----SPKTANKSESEKGKGESEKDK 1520
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 570 VDPAGYDPRCNGYLSVLDDFSD*DQAARLMI 662
VDPAG NGY + L D D D +R +I
Sbjct: 708 VDPAGSPANTNGYYADLADLDDVDDTSRDVI 738
>SB_39039| Best HMM Match : Drf_FH1 (HMM E-Value=6.4)
Length = 254
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 193 AQVPATGSAHLTPATAPRPKAQHPEDVPDPFIET 294
A P +A P T P P+ + D+PDP +ET
Sbjct: 207 APTPQPTAATPLPETEPEPEPEPDLDLPDPPLET 240
>SB_36892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 181 CLNRAQVPATGSAHLTPATAPRPKA-QHPEDVPDPFIETISPRYAVDIAANQIAGYKEKN 357
CL+ Q P + H+TP P+ +A QH + + RY NQ AG ++K+
Sbjct: 22 CLDVNQEPCYPTEHVTPVKHPKTEAHQHNNQESQDRQDGQAARY------NQRAGIEKKD 75
Query: 358 RHTKGGKVKI 387
R G + I
Sbjct: 76 REYTSGTLTI 85
>SB_7791| Best HMM Match : SSDP (HMM E-Value=0.41)
Length = 901
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 205 ATGSAHLTPATAPRPKAQHPEDVPDPFIETISPRYAVDIAANQIAGYKEKNR 360
A G+A++TP R +A +P + PR+ + ++ YK K++
Sbjct: 414 AVGTANMTPLEQIRAQAIAQGTMPPGPTYQVMPRFQTPVGHTKVPSYKRKSK 465
>SB_53475| Best HMM Match : PAN (HMM E-Value=0.00029)
Length = 431
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 320 ISTAYRGEIVSINGSGTSSGCWALGRGAVAGVK 222
I+T+ +SI GS TS GC G GAVA +K
Sbjct: 270 ITTSESNGGLSIAGSVTSYGCGNPGSGAVAFIK 302
>SB_17245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 476 FITRSLPFIRI*PLFSIRYRKS*ANAGSISIFTLPPFVCRFFSL 345
F+TR LPF LF+IRY A S+ FV RFFS+
Sbjct: 142 FVTRYLPFAICHSLFAIRYSPL-AVCHSLFATRCLVFVHRFFSI 184
>SB_5210| Best HMM Match : Keratin_B2 (HMM E-Value=8)
Length = 139
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 645 PDLNLKNHPIQTDTHYTSGHNPQDQPHVN 559
P++N HP T TH ++ H P P++N
Sbjct: 4 PNINPCKHP--TSTHASTQHQPMQAPNIN 30
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 645 PDLNLKNHPIQTDTHYTSGHNPQDQPHVN 559
P++N HP T TH ++ H P P++N
Sbjct: 27 PNINPCKHP--TSTHASTQHQPMQAPNIN 53
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 645 PDLNLKNHPIQTDTHYTSGHNPQDQPHVN 559
P++N HP T TH ++ H P P++N
Sbjct: 50 PNINPCKHP--TSTHASTQHQPMQAPNIN 76
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 645 PDLNLKNHPIQTDTHYTSGHNPQDQPHVN 559
P++N HP T TH ++ H P P++N
Sbjct: 73 PNINPCKHP--TSTHASTQHQPMQAPNIN 99
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 645 PDLNLKNHPIQTDTHYTSGHNPQDQPHVN 559
P++N HP T TH ++ H P P++N
Sbjct: 96 PNINPCKHP--TSTHASTQHQPMQAPNIN 122
>SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 199 VPATGSAHLTPATAPRPKAQHPEDVPDPFIETISPRY--AVDIAANQIAGYKE 351
+P AHL P P P HP+D DP T Y + + +AG++E
Sbjct: 196 LPHLAEAHLDPVRGPVPLGAHPQD-QDPH-GTRGGHYDWLLAVECRDLAGFEE 246
>SB_1366| Best HMM Match : Collagen (HMM E-Value=6.2e-05)
Length = 442
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 666 VLSSILPPDLNLKNHPIQTDTHYTSGHNPQDQP 568
V + PPD+N K H H G +D+P
Sbjct: 402 VYEKMAPPDVNTKTHEFLKTNHNDLGLTEEDEP 434
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,627,089
Number of Sequences: 59808
Number of extensions: 496271
Number of successful extensions: 1172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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