Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0523
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15440.1 68417.m02361 hydroperoxide lyase (HPL1) identical to...    31   0.95 
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    30   1.3  
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    29   3.8  
At2g16210.1 68415.m01857 transcriptional factor B3 family protei...    28   5.1  
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ...    27   8.9  

>At4g15440.1 68417.m02361 hydroperoxide lyase (HPL1) identical to
           hydroperoxide lyase GI:3822403 from [Arabidopsis
           thaliana]
          Length = 384

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -2

Query: 426 PLSEVLSKCWIYFNLYLAPFRMPVFFFI---SGYLIRRYIDSVPWGNCLDKRIWNIFWVL 256
           PL E+L   W Y +L +A     ++ FI   +G  +R  +    +G   D+ I N+ +VL
Sbjct: 137 PLEEILLHTWPYPSLLIAGNYKKLYNFIDENAGDCLR--LGQEEFGLTRDEAIQNLLFVL 194

Query: 255 GFGAW 241
           GF A+
Sbjct: 195 GFNAY 199


>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
            EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
            member of the natural resistance-associated macrophage
            protein (NRAMP) metal transporter family, PMID:11500563;
            metal transport capacity has not been shown,
            PMID:11500563, PMID:1038174
          Length = 1294

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 339  GYLIRRYIDSVPWGNCLDKRIWNIFWVLGFGAWC 238
            G++    I SVP  NC D  +W    ++ FG WC
Sbjct: 1110 GHMGEPLISSVP--NCGDGCVWRADLIVSFGVWC 1141


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
            ubiquitin-transferase family protein /
            armadillo/beta-catenin-like repeat-containing protein
            similar to SP|Q14669 Thyroid receptor interacting protein
            12 (TRIP12) {Homo sapiens}; contains Pfam profiles
            PF00632: HECT-domain (ubiquitin-transferase), PF00514:
            Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 442  DHFSASVIGSPEQMLDLFQSLPCPLSYAGFFLYIRL 335
            D F+ S  G P    DL  S PC  S+     Y RL
Sbjct: 1044 DSFAVSTCGLPPWFNDLMDSCPCLFSFEAKSKYFRL 1079


>At2g16210.1 68415.m01857 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 291

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 285 KRIWNIFWVLGFGAWCSGWR 226
           K+ WN+ ++  FGA+  GWR
Sbjct: 241 KKSWNVVYLERFGAFSGGWR 260


>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 500

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 193 AQVPATGSAHLTPATAPRPKAQHPEDVPDPFIETIS 300
           A V +TG+ +LTP +  + K   P  +PDP  E I+
Sbjct: 15  ASVSSTGNQNLTPKSVGKKKRNLP-GMPDPDAEVIA 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,590,726
Number of Sequences: 28952
Number of extensions: 341810
Number of successful extensions: 1019
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)